PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C01320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 191aa MW: 21693.3 Da PI: 9.7451 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.2 | 5.2e-15 | 23 | 69 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+ WTteE+ +++++ +++G g+Wk I+r++ +++t+ q+ s+ qky Pahal.C01320.1 23 RLLWTTEEHRQFLRGLHMYGRGDWKNISRHFVTTKTPVQVSSHTQKY 69 677*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.759 | 18 | 74 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-10 | 22 | 72 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.4E-14 | 22 | 72 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.58E-16 | 22 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.3E-12 | 25 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-9 | 25 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.62E-10 | 26 | 65 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MVEEPSQRQR QVIIPQQERL HRRLLWTTEE HRQFLRGLHM YGRGDWKNIS RHFVTTKTPV 60 QVSSHTQKYF RRVERTTEKQ RCSINDVGLY DAEPLARSNS FSLEALAFVG GANKQNGYGS 120 GSQLATMNNL AQIWSPFSYM TDQASNSQAT TWIVQQTGFS SSATLAPEGP KIQMAWIGDQ 180 PGDFLPEQKM * |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806558.1 | 1e-116 | uncharacterized protein LOC112885100 | ||||
TrEMBL | A0A2S3H852 | 1e-141 | A0A2S3H852_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca01212.1.p | 6e-99 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 3e-23 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C01320.1 |