PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C01291.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 504aa MW: 51950.9 Da PI: 6.8544

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C01291.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.9	2.8e-16	320	366	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq Pahal.C01291.1 320 VHNLSERRRRDRINQKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 366 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.21E-17	312	370	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.0E-20	313	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-20	313	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.739	316	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.3E-14	320	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-17	322	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0080113	Biological Process	regulation of seed growth
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MTGPGDELAE LLWDNGPALR RAPPPFQPFT CSAAGSSRAH ELKRHAAGGM VPVPLGIHDG 60 GGLPGLHAHG GGDDDAVPWL HCPVVVDDGD ADTAPLPPEY CAGLLSEYQG LPAAPPASHG 120 AAVPASRAAP PEAAAKQAPP PGSASGGGEG VMNFTFFSRP LQRPQASAAA AASIPVESTV 180 VQAATNRLRA TPLFSEQRMA WLQPPNGPRA TVAGAAPAPA PAPAAQAPLP TDHHLHGEAA 240 TVTQRRLQPE ARAPGAAAAT AVVTTSSVCS GNGDRSQHPK RSSHQVADCS VSPDEDLDDE 300 GGAIRRSASR SNKRSRTAEV HNLSERRRRD RINQKMRALQ ELIPNCNKID KASMLEEAIE 360 YLKTLQLQVQ MMSMGTGLCV PPMLLPAMQV PVPHPMAHFP HLGMGLGFGM GAAAAFDMAR 420 VAGAHFPCPP MAMPPGPMFG VPGQAMPSPA AAAFAHMAAS GTAPLEHIEA AAAAPAREEA 480 EPPPAPVATL TQGDQKLQHP KPT*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MTGPGDELAE LLWDNGPALR RAPPPFQPFT CSAAGSSRAH ELKRHAAGGM VPVPLGIHDG  60
GGLPGLHAHG GGDDDAVPWL HCPVVVDDGD ADTAPLPPEY CAGLLSEYQG LPAAPPASHG  120
AAVPASRAAP PEAAAKQAPP PGSASGGGEG VMNFTFFSRP LQRPQASAAA AASIPVESTV  180
VQAATNRLRA TPLFSEQRMA WLQPPNGPRA TVAGAAPAPA PAPAAQAPLP TDHHLHGEAA  240
TVTQRRLQPE ARAPGAAAAT AVVTTSSVCS GNGDRSQHPK RSSHQVADCS VSPDEDLDDE  300
GGAIRRSASR SNKRSRTAEV HNLSERRRRD RINQKMRALQ ELIPNCNKID KASMLEEAIE  360
YLKTLQLQVQ MMSMGTGLCV PPMLLPAMQV PVPHPMAHFP HLGMGLGFGM GAAAAFDMAR  420
VAGAHFPCPP MAMPPGPMFG VPGQAMPSPA AAAFAHMAAS GTAPLEHIEA AAAAPAREEA  480
EPPPAPVATL TQGDQKLQHP KPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	324	329	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269\|PubMed:17485859}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269\|PubMed:17485859}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805180.1	0.0	transcription factor APG-like
Swissprot	Q0JNI9	5e-93	PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBL	A0A2S3H891	0.0	A0A2S3H891_9POAL; Uncharacterized protein
STRING	Pavir.Ca01237.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3527	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-32	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Pahal.C01291.1

Publications ? help Back to Top
Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]