PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01275.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 393aa    MW: 40562.8 Da    PI: 5.2365
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01275.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY22.81.8e-071541823159
                     T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  31 gCpvkkkversaedpkvveitYegeHnhe 59 
                     + + +++v+r+aed+ v+++tYeg+Hnh+
  Pahal.C01275.2 154 QAQQQQQVQRCAEDKAVLITTYEGTHNHQ 182
                     567789**********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031068.0E-5143182IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.6E-7153184IPR003657WRKY domain
SuperFamilySSF1182907.98E-5156184IPR003657WRKY domain
PROSITE profilePS508119.201158184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDLVPKQEQH KEEEEKEEEK ESMILAEHSN RANFGHGGSG RSEIKEVDFF STGGARRRTD  60
DDDDGDGEDW NREASGAPGR GNTTVNTALD LLTTAAATPV NGGEGTAAGA ASDQKEAATV  120
EGELRQAGEE NRRLRRMLDD LTRSYSALYH QLIQAQQQQQ VQRCAEDKAV LITTYEGTHN  180
HQLPPAAAAM AKTTSAAAAM LLSGPAASRD AGALFAGHHV AAPAPLFQSY PYASAAMGAT  240
LSASAPFPTI TLDLTHPPPA PAAGLLPHRP PALPAMPFPM YGGFPAAHRP AAAVPPQPTT  300
VSLGMMDARN RSALETMTAA ITSDPNFTTA LAAALSTIIG GGGEAAPRSG AGGNGDGNNG  360
SGGTEPSATA AAAGARETAL HALLQRLHDS RQ*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809808.11e-136probable WRKY transcription factor 47 isoform X1
RefseqXP_025809809.11e-136WRKY transcription factor 6-like isoform X2
TrEMBLA0A2S3H8120.0A0A2S3H812_9POAL; Uncharacterized protein
STRINGPavir.J02788.1.p1e-128(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.18e-14WRKY family protein