PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C01223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 357aa MW: 37928.9 Da PI: 5.2298 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.1 | 1e-18 | 39 | 86 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+llv++++ +G g+W++ ar g++Rt+k+c++rw++yl Pahal.C01223.1 39 RGPWTVEEDLLLVNYIAAHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 86 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 1e-16 | 92 | 135 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Pahal.C01223.1 92 RGNITAEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 135 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.982 | 34 | 90 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-31 | 36 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-15 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-17 | 39 | 86 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-23 | 40 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.57E-12 | 41 | 86 | No hit | No description |
SMART | SM00717 | 3.3E-15 | 91 | 139 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.254 | 91 | 141 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.3E-15 | 92 | 135 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 94 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.47E-12 | 96 | 135 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MDMGMGGGLD ELEVLAMSPG GSAASAGAAG SEDEADLRRG PWTVEEDLLL VNYIAAHGEG 60 RWNSLARSAG LKRTGKSCRL RWLNYLRPDV RRGNITAEEQ LLILELHSRW GNRWSKIAQH 120 LPGRTDNEIK NYWRTRVQKH AKQLRCDVNS RQFRDVVRHV WMPRLVERIQ SESAGAGAGA 180 GAAGGGQAAA AAAPATTTAS MPAAYHLGPY GGHRQSADVV VPPNKSHGGY AHADYYSYSE 240 PGQAAAPAAM SPDDTSSALR STLTDASHGA QHHYATSAAT PTNEGCGAAG GAAAGPMTDG 300 DDVVQEEEDV FAGTWSELLA TAGRDDDSNS KIGLPDFELG DFEMWSLEDL CLQQLC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-26 | 36 | 139 | 1 | 103 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679434 | 1e-137 | HF679434.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB28 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806553.1 | 0.0 | transcription factor MYB2-like | ||||
Swissprot | Q10MB4 | 1e-92 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
TrEMBL | A0A2S3H7R2 | 0.0 | A0A2S3H7R2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J03771.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 4e-83 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C01223.1 |
Publications ? help Back to Top | |||
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