PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01223.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 357aa    MW: 37928.9 Da    PI: 5.2298
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01223.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.11e-183986148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+llv++++ +G g+W++ ar  g++Rt+k+c++rw++yl
   Pahal.C01223.1 39 RGPWTVEEDLLLVNYIAAHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 86
                     89********************************************97 PP

2Myb_DNA-binding52.71e-1692135146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
   Pahal.C01223.1  92 RGNITAEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 135
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.9823490IPR017930Myb domain
SuperFamilySSF466895.62E-3136133IPR009057Homeodomain-like
SMARTSM007171.1E-153888IPR001005SANT/Myb domain
PfamPF002497.0E-173986IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-234093IPR009057Homeodomain-like
CDDcd001673.57E-124186No hitNo description
SMARTSM007173.3E-1591139IPR001005SANT/Myb domain
PROSITE profilePS5129419.25491141IPR017930Myb domain
PfamPF002492.3E-1592135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2394140IPR009057Homeodomain-like
CDDcd001675.47E-1296135No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDMGMGGGLD ELEVLAMSPG GSAASAGAAG SEDEADLRRG PWTVEEDLLL VNYIAAHGEG  60
RWNSLARSAG LKRTGKSCRL RWLNYLRPDV RRGNITAEEQ LLILELHSRW GNRWSKIAQH  120
LPGRTDNEIK NYWRTRVQKH AKQLRCDVNS RQFRDVVRHV WMPRLVERIQ SESAGAGAGA  180
GAAGGGQAAA AAAPATTTAS MPAAYHLGPY GGHRQSADVV VPPNKSHGGY AHADYYSYSE  240
PGQAAAPAAM SPDDTSSALR STLTDASHGA QHHYATSAAT PTNEGCGAAG GAAAGPMTDG  300
DDVVQEEEDV FAGTWSELLA TAGRDDDSNS KIGLPDFELG DFEMWSLEDL CLQQLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-26361391103MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794341e-137HF679434.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB28 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806553.10.0transcription factor MYB2-like
SwissprotQ10MB41e-92MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A2S3H7R20.0A0A2S3H7R2_9POAL; Uncharacterized protein
STRINGPavir.J03771.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.14e-83myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]