PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C01181.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 1694aa MW: 182379 Da PI: 6.4538

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C01181.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	834	876	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE e++ + +++G++ +++I++ + ++t +c+++++k+ Pahal.C01181.3 834 PWTQEEKEIFMEMLAKFGKD-FSKISSFLM-HKTTADCVEFYYKH 876 8***************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF81995	6.28E-5	293	378	No hit	No description
SuperFamily	SSF46689	2.02E-14	819	879	IPR009057	Homeodomain-like
PROSITE profile	PS51293	15.477	830	881	IPR017884	SANT domain
SMART	SM00717	1.8E-9	831	879	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-7	832	878	IPR009057	Homeodomain-like
Pfam	PF00249	1.7E-7	833	876	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	12.6	1040	1091	IPR017884	SANT domain
SMART	SM00717	4.5E-6	1041	1089	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.01E-8	1044	1091	IPR009057	Homeodomain-like
CDD	cd00167	1.89E-4	1045	1083	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1694 aa Download sequence Send to blast
MPPPPPDRRD YLYREGRRHD GGGGGDPLLP PAPTPPRWRD SPYHPPPPPP LRDHARPSPR 60 RAPPSASSEG YYRQAGGAYD RSYPDEPPLG YTPSRSDRYW TEDDGGGYKG FGRYGGGGGR 120 RDGRDIRGSY RRSPFRGYGS DFSRNHPEQP PPPPPRRSPL RSVAVPICYD PPGNRVDKGD 180 RDNLPRVTPW RRRESRSEVA DAAGAGPVSV GQTTRSAPSE KEASAQPPAG AAPHGADEEA 240 PRKKARLGWG QGLAKYEKQK VQGPADLAEA VADGSPADSE QKAAFPVPPP PPEPPAAPAP 300 LPEPPAAPAP PPEPPAAPAP PPPPAPPAAP APPATPAPEP LAPVQPAAPV PAAVYVPAPV 360 SAPSPARCPS PVDAPSSAAP FCTSAPEDKS YEQMAHMAIH PTKDVPEAGD KTFNTEFSIK 420 FDQLGSDPIN SLANMLADLL QHDDSCSGDS KGPTNASKLL LLKESISKEI EKTELEIDLL 480 EGELKSVSTK AGTAVEGSPT GVTYAEILSP SSGTSKVPVC VEISETSHVM KEPVELISSP 540 KPPVVQDANA KGSDMMEIEN APVRNAKTVS SEESAVSPVV AEGPACAAAD LSPLKASEGA 600 GSQIDMDNDR LETSPCHDNA DSIKTEVSDD PPVRQCSHHD HKYSLTSANN NIAKVTNESL 660 FKLLPADTLC LDLLASSHLL SQRKNDHHIK ERLGVCKNRL RLKEQILTLK FKAYRHLWKE 720 DLRLLSAKKQ RSKSNKRIDQ SNRASHIGSQ RQRSSNRSRL AMPAGNLSTF STPEMSDVAS 780 KLFSEFQIKR CRNYLKMPAL IIDEREKECL RFVSKNSLVD DPVLVEKERV MINPWTQEEK 840 EIFMEMLAKF GKDFSKISSF LMHKTTADCV EFYYKHHKSD SFREVKKLLD LRQQQPTGNF 900 LGAKSGKKWN PEANAASLDM LGVASVVAAH GLEYANRVEK VSAKSLIRTA YGSSISFAAK 960 KSSDREGIDS VPLNERESVA ADVLAGICGT LSPEGMGSCI TSSADLGQKI GMTRMEHILA 1020 SEFDRSIDEE DTLSDQECEV DPVDWNDDEK SIFIEAMNNY GKDFARISSC VKSKSYEQCK 1080 VFFSKARKSL GLDLIHRGAA DVSMPTSDTN GGRSDTDEAC AAEMDSAICS TQSCSKIEMD 1140 VCPTEKGIGG IITKQPELNP SNGFDAVNGK TGEDEKKADK NCGIVDHERF DEGTHQAACG 1200 PIDINCPEST EKLHGKDDAV DQVNMHNNSA ISSSTDQAMA VQSEVGSCLH SIEVLHQTSK 1260 APSGSGTDAS GMEECSNHAL DNKLLKAGNS GASSCIASDT CDNVQFANMT GASTISPTFA 1320 SSYKHSVPAD MAPTKPKPLV APLTPKDLMP VQFSSAVPDP TVIRFDGIAS ITMPNFEDSG 1380 SRVSSALGPK DMSKYPAFKD PTGNQHDTLF RNVDGFTNHL TTELPIFSER TASGTASTSQ 1440 TDRFTLTKFQ NGKSSSLGLP NTSDGIQWAR KHEEVLQGSL RSCSQNTSSE GDEQQKRPGD 1500 VKLFGKILNH QSYLQSSVPS CNGNKSKPPS PKVDMSSVRL SNNPRDRVVC SSRPGVTHLG 1560 LEERTARSYG HLDVSTTQPE PLLMMAKCQS LAGVPFYSAK NGAVGVFSDY QQPSIQPHQS 1620 DPKRLERFSD PQKRNGMELI SGFQQPGKIS RFGGAGILVS GVSDPVAALK AQYGPSSKVM 1680 GNDVDPWKDI GSR*

Sequence ? help Back to Top

Protein Sequence Length: 1694 aa Download sequence Send to blast

MPPPPPDRRD YLYREGRRHD GGGGGDPLLP PAPTPPRWRD SPYHPPPPPP LRDHARPSPR  60
RAPPSASSEG YYRQAGGAYD RSYPDEPPLG YTPSRSDRYW TEDDGGGYKG FGRYGGGGGR  120
RDGRDIRGSY RRSPFRGYGS DFSRNHPEQP PPPPPRRSPL RSVAVPICYD PPGNRVDKGD  180
RDNLPRVTPW RRRESRSEVA DAAGAGPVSV GQTTRSAPSE KEASAQPPAG AAPHGADEEA  240
PRKKARLGWG QGLAKYEKQK VQGPADLAEA VADGSPADSE QKAAFPVPPP PPEPPAAPAP  300
LPEPPAAPAP PPEPPAAPAP PPPPAPPAAP APPATPAPEP LAPVQPAAPV PAAVYVPAPV  360
SAPSPARCPS PVDAPSSAAP FCTSAPEDKS YEQMAHMAIH PTKDVPEAGD KTFNTEFSIK  420
FDQLGSDPIN SLANMLADLL QHDDSCSGDS KGPTNASKLL LLKESISKEI EKTELEIDLL  480
EGELKSVSTK AGTAVEGSPT GVTYAEILSP SSGTSKVPVC VEISETSHVM KEPVELISSP  540
KPPVVQDANA KGSDMMEIEN APVRNAKTVS SEESAVSPVV AEGPACAAAD LSPLKASEGA  600
GSQIDMDNDR LETSPCHDNA DSIKTEVSDD PPVRQCSHHD HKYSLTSANN NIAKVTNESL  660
FKLLPADTLC LDLLASSHLL SQRKNDHHIK ERLGVCKNRL RLKEQILTLK FKAYRHLWKE  720
DLRLLSAKKQ RSKSNKRIDQ SNRASHIGSQ RQRSSNRSRL AMPAGNLSTF STPEMSDVAS  780
KLFSEFQIKR CRNYLKMPAL IIDEREKECL RFVSKNSLVD DPVLVEKERV MINPWTQEEK  840
EIFMEMLAKF GKDFSKISSF LMHKTTADCV EFYYKHHKSD SFREVKKLLD LRQQQPTGNF  900
LGAKSGKKWN PEANAASLDM LGVASVVAAH GLEYANRVEK VSAKSLIRTA YGSSISFAAK  960
KSSDREGIDS VPLNERESVA ADVLAGICGT LSPEGMGSCI TSSADLGQKI GMTRMEHILA  1020
SEFDRSIDEE DTLSDQECEV DPVDWNDDEK SIFIEAMNNY GKDFARISSC VKSKSYEQCK  1080
VFFSKARKSL GLDLIHRGAA DVSMPTSDTN GGRSDTDEAC AAEMDSAICS TQSCSKIEMD  1140
VCPTEKGIGG IITKQPELNP SNGFDAVNGK TGEDEKKADK NCGIVDHERF DEGTHQAACG  1200
PIDINCPEST EKLHGKDDAV DQVNMHNNSA ISSSTDQAMA VQSEVGSCLH SIEVLHQTSK  1260
APSGSGTDAS GMEECSNHAL DNKLLKAGNS GASSCIASDT CDNVQFANMT GASTISPTFA  1320
SSYKHSVPAD MAPTKPKPLV APLTPKDLMP VQFSSAVPDP TVIRFDGIAS ITMPNFEDSG  1380
SRVSSALGPK DMSKYPAFKD PTGNQHDTLF RNVDGFTNHL TTELPIFSER TASGTASTSQ  1440
TDRFTLTKFQ NGKSSSLGLP NTSDGIQWAR KHEEVLQGSL RSCSQNTSSE GDEQQKRPGD  1500
VKLFGKILNH QSYLQSSVPS CNGNKSKPPS PKVDMSSVRL SNNPRDRVVC SSRPGVTHLG  1560
LEERTARSYG HLDVSTTQPE PLLMMAKCQS LAGVPFYSAK NGAVGVFSDY QQPSIQPHQS  1620
DPKRLERFSD PQKRNGMELI SGFQQPGKIS RFGGAGILVS GVSDPVAALK AQYGPSSKVM  1680
GNDVDPWKDI GSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	4e-14	792	883	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	4e-14	792	883	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	727	733	KKQRSKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807439.1	0.0	uncharacterized protein LOC112885940 isoform X2
TrEMBL	A0A2S3H7M3	0.0	A0A2S3H7M3_9POAL; Uncharacterized protein
STRING	Si020953m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-83	MYB family protein

Link Out ? help Back to Top
Phytozome	Pahal.C01181.3