PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C01159.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 22095.1 Da PI: 6.4918 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.7 | 8.7e-43 | 37 | 136 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C++ Cvlapyfp ++p+kfa +h++FGasn++kll++lpee+r da+ss+vyeA ar+rdPvyG++g i +lq+q++ lka+la Pahal.C01159.1 37 PCAACKILRRRCVDRCVLAPYFPPTEPHKFATAHRVFGASNIIKLLQELPEEHRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNDLKAQLA 131 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e Pahal.C01159.1 132 RAHAE 136 *9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.011 | 36 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-42 | 37 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MDSSSSDTAA TAALPPGGAS TPPTSPQPQQ PAVVLSPCAA CKILRRRCVD RCVLAPYFPP 60 TEPHKFATAH RVFGASNIIK LLQELPEEHR ADAVSSMVYE ASARIRDPVY GCAGAICQLQ 120 KQVNDLKAQL ARAHAELAGA RAQHAHLLAL LCVEVAAASS PAYCAVDYPS AQLAAAAPAA 180 QADALYVIDG GSGSGLQLQS SPVSWADEPL WT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-44 | 36 | 137 | 10 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-44 | 36 | 137 | 10 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809139.1 | 1e-151 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 3e-61 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A2S3H7K5 | 1e-150 | A0A2S3H7K5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04684.1.p | 1e-119 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-53 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C01159.1 |