PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C01089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 33361.7 Da PI: 7.1973 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.6 | 3.8e-15 | 45 | 92 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv v+++G ++W+ a+ g++Rt+k+c++rw +yl Pahal.C01089.1 45 KGPWTEEEDAQLVWFVRLFGERRWDFLAKVSGLRRTGKSCRLRWVNYL 92 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.5 | 2.7e-17 | 98 | 141 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr T++E+ l++++++q+G++ W++Iar ++ gRt++++k++w++ Pahal.C01089.1 98 RGRITPDEERLILELHTQYGSK-WSRIARSLP-GRTDNEIKNYWRT 141 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.356 | 40 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.06E-29 | 42 | 139 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-13 | 44 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 45 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-20 | 46 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.92E-10 | 47 | 92 | No hit | No description |
PROSITE profile | PS51294 | 23.268 | 93 | 147 | IPR017930 | Myb domain |
SMART | SM00717 | 4.2E-14 | 97 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 98 | 141 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 100 | 145 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.88E-11 | 102 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDHHRSMAAA AMSMFSRNKQ KKDGERSSSS GNQETAAAVP PGMRKGPWTE EEDAQLVWFV 60 RLFGERRWDF LAKVSGLRRT GKSCRLRWVN YLHPGLRRGR ITPDEERLIL ELHTQYGSKW 120 SRIARSLPGR TDNEIKNYWR TRTRKQKAAS QAKAAASASA SASSSSTVTT TASCYGSPSS 180 GSGRLTAASS SAVNESALRE SGGGDDEDDA ELDEASTTAA SQHRHQQQQQ QESSYTMDQF 240 WNEIAAADAA ASYMMVDGWG GAGHPAAAEP PVPSSPVWEY CSDYSLWRID DEEYYKKMLD 300 AS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 41 | 146 | 3 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728360 | 1e-100 | KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806767.1 | 1e-166 | transcription factor MYB48-like | ||||
TrEMBL | A0A2S3H7I2 | 0.0 | A0A2S3H7I2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00653.1.p | 1e-144 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 3e-57 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C01089.1 |