PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C01086.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 185aa MW: 19838.8 Da PI: 7.5298 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00037 | 43 | 65 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H Pahal.C01086.1 43 FVCKTCNRTFPSFQALGGHRASH 65 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.31E-8 | 41 | 106 | No hit | No description |
Pfam | PF13912 | 6.2E-13 | 42 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.092 | 43 | 65 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.723 | 43 | 70 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 65 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.642 | 84 | 114 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.8 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.8E-8 | 84 | 108 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MKRFAVQEGE MARVLMLMSH GQEPALPLLP VAGRGDRAPE RVFVCKTCNR TFPSFQALGG 60 HRASHKKPRL DGDGDPSLAK PKLHGCSICG LEFAIGQALG GHMRRHRAMT GGMPPATTIV 120 VDKKPDVSII HDDSVKRGLW LDLNHPPCDD GCDAEAECGH NATAGITFHQ FLDTGTMAVD 180 CLGY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012613 | 3e-94 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809105.1 | 1e-134 | zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 3e-24 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | A0A2S3H7E0 | 1e-133 | A0A2S3H7E0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05290.1.p | 1e-127 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 3e-29 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C01086.1 |