PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C01069.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 347aa MW: 35395.7 Da PI: 8.8505 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.7 | 4.5e-37 | 90 | 148 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 e lkcprC+stntkfCy+nnyslsqPr+fC+aCrryWt+GGalrnvPvGgg r++ k+ Pahal.C01069.1 90 EPGLKCPRCESTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKR 148 56789************************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-37 | 73 | 145 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.658 | 93 | 147 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.8E-32 | 93 | 147 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 95 | 131 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MIFPPAFLDS SSWNDNQQQQ QQHQHQQQAH HQVAASGGGG DGNHDLLQPS IMGGALPEGC 60 PGGGGAGQVG PAKPMSMAER ARLARIPLPE PGLKCPRCES TNTKFCYFNN YSLSQPRHFC 120 RACRRYWTRG GALRNVPVGG GYRRHAKRAK PKAAAAPGSG TAASAATAAL APAGSTSSAC 180 TTTNVPALPG PAMLGGNLSM LPPLLRLADF DAMSLGSSFS GMGKPSLDAA GGYSVGGGSG 240 PGGLEQWRVQ QMQSFPFLHA MDQGPLGPPL AMTMAPGMFQ LGLDSGDGRG GGGAGGEDGS 300 GELHVMQAKR EGGGGYAARG MYGDHHLAAA GYASYSNNAA TGNHLL* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00407 | DAP | Transfer from AT3G55370 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079356 | 1e-113 | AC079356.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0016H04, complete sequence. | |||
GenBank | AK108933 | 1e-113 | AK108933.1 Oryza sativa Japonica Group cDNA clone:002-153-A09, full insert sequence. | |||
GenBank | AP014961 | 1e-113 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | GQ183552 | 1e-113 | GQ183552.1 Oryza sativa Japonica Group Dof-type zinc finger protein 25 gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807610.1 | 0.0 | dof zinc finger protein DOF3.6-like isoform X3 | ||||
TrEMBL | A0A2S3H7B8 | 0.0 | A0A2S3H7B8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00639.1.p | 1e-162 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 4e-43 | OBF-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C01069.1 |