PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C01045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 706aa MW: 80090 Da PI: 8.0429 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 342.2 | 8.7e-105 | 327 | 697 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++lL++cA+ v+++d +la++l++++++++spdgd +qRla+y++ +L+arla+ +s+ly+++ ++ + +e+++++kl ++P+l+ s+ Pahal.C01045.1 327 LRTLLIHCAQSVAADDRQLATELIKKIRQHSSPDGDCTQRLAFYLVDGLEARLAGIGSQLYRKFLEKRVT---DEEVFKIYKLCLAAFPLLRASN 418 6789*********************************************************999888887...7899999*************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 aN++I+ea g+ +vHiiDf+i G+QWp+L+q++a++ + pp+lRiTg++ ++g e +e+ g+rLa++A+ ++vpf+++ +++r+e+ Pahal.C01045.1 419 AFANKTIVEASRGQLKVHIIDFGICFGFQWPSLIQQFAEQ-GVPPMLRITGIDVTRPGfgTLEITEQAGKRLADYANMFKVPFQYQG-ISSRFEN 511 ***************************************6.889**********99989899999**********************.7****** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 +++e+L+++++E l+Vn+ +++++l de+vs++s+rd+vLk++++++Pkv+++ + +++s+ F +rf e l +ys++fd+++a++pr++e+r+ Pahal.C01045.1 512 VQIEDLNIEEDELLIVNCLYRMKSLGDETVSMNSARDRVLKIMRRINPKVFILGVVNGSYSSPFFITRFKELLFHYSSVFDMFDANAPRDNEARK 606 *********************************************************************************************** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +E ++l+re+ n++acegaer+ r et+++W++r +aGF+++p++ + +++ + + ++ + + +e+sg+l++gWk+r + ++S W+ Pahal.C01045.1 607 LLEGRVLAREAINIIACEGAERTDRPETYKQWQARCLKAGFEQLPVDPAILNSIIEMKKAIYHEDFVADEDSGWLLQGWKGRVMHAISKWK 697 **************************************************************899*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 60.407 | 301 | 677 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.0E-102 | 327 | 697 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MQQLTTYNYR LSDPQFFPQP TNNESNAEIS DLVPIPGMYN VSSNLGQNQL QIPAGISPDY 60 QRIRSNNALH NISQMLMEDV DERVGLHEGE PALHAAEKAF YDILEQVYPP SWPPLCSNNE 120 ADGPDESRNN CQKRPRSTSS TSDMSSRSVL HPLPAPLSPY NYGRSLFMPY QPSTSTGRAA 180 RFGFPALQII RSAEDAKGFD KSVIYLDSDK LCICRLTTKA KEVEKSKYAV FQITDHRGNN 240 PYTQDLNNRE GRSSKQHTNT VTCEISQNRK FDRILLCYRH ECFNETVSLR ELMGKQARKD 300 SPKGQSKGPA QQKLRGKRQI NKEVVDLRTL LIHCAQSVAA DDRQLATELI KKIRQHSSPD 360 GDCTQRLAFY LVDGLEARLA GIGSQLYRKF LEKRVTDEEV FKIYKLCLAA FPLLRASNAF 420 ANKTIVEASR GQLKVHIIDF GICFGFQWPS LIQQFAEQGV PPMLRITGID VTRPGFGTLE 480 ITEQAGKRLA DYANMFKVPF QYQGISSRFE NVQIEDLNIE EDELLIVNCL YRMKSLGDET 540 VSMNSARDRV LKIMRRINPK VFILGVVNGS YSSPFFITRF KELLFHYSSV FDMFDANAPR 600 DNEARKLLEG RVLAREAINI IACEGAERTD RPETYKQWQA RCLKAGFEQL PVDPAILNSI 660 IEMKKAIYHE DFVADEDSGW LLQGWKGRVM HAISKWKPNE SCSDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 4e-42 | 308 | 698 | 1 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809503.1 | 0.0 | scarecrow-like protein 30 | ||||
Swissprot | O80933 | 1e-141 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A2S3H797 | 0.0 | A0A2S3H797_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J13190.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-135 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C01045.1 |