PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01045.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 706aa    MW: 80090 Da    PI: 8.0429
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01045.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS342.28.7e-1053276971374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+ v+++d +la++l++++++++spdgd +qRla+y++ +L+arla+ +s+ly+++  ++ +    +e+++++kl   ++P+l+ s+
  Pahal.C01045.1 327 LRTLLIHCAQSVAADDRQLATELIKKIRQHSSPDGDCTQRLAFYLVDGLEARLAGIGSQLYRKFLEKRVT---DEEVFKIYKLCLAAFPLLRASN 418
                     6789*********************************************************999888887...7899999*************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                       aN++I+ea  g+ +vHiiDf+i  G+QWp+L+q++a++ + pp+lRiTg++  ++g    e +e+ g+rLa++A+ ++vpf+++  +++r+e+
  Pahal.C01045.1 419 AFANKTIVEASRGQLKVHIIDFGICFGFQWPSLIQQFAEQ-GVPPMLRITGIDVTRPGfgTLEITEQAGKRLADYANMFKVPFQYQG-ISSRFEN 511
                     ***************************************6.889**********99989899999**********************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++++E l+Vn+ +++++l de+vs++s+rd+vLk++++++Pkv+++   + +++s+ F +rf e l +ys++fd+++a++pr++e+r+
  Pahal.C01045.1 512 VQIEDLNIEEDELLIVNCLYRMKSLGDETVSMNSARDRVLKIMRRINPKVFILGVVNGSYSSPFFITRFKELLFHYSSVFDMFDANAPRDNEARK 606
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +E ++l+re+ n++acegaer+ r et+++W++r  +aGF+++p++  + +++  + + ++ + +  +e+sg+l++gWk+r + ++S W+
  Pahal.C01045.1 607 LLEGRVLAREAINIIACEGAERTDRPETYKQWQARCLKAGFEQLPVDPAILNSIIEMKKAIYHEDFVADEDSGWLLQGWKGRVMHAISKWK 697
                     **************************************************************899*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.407301677IPR005202Transcription factor GRAS
PfamPF035143.0E-102327697IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MQQLTTYNYR LSDPQFFPQP TNNESNAEIS DLVPIPGMYN VSSNLGQNQL QIPAGISPDY  60
QRIRSNNALH NISQMLMEDV DERVGLHEGE PALHAAEKAF YDILEQVYPP SWPPLCSNNE  120
ADGPDESRNN CQKRPRSTSS TSDMSSRSVL HPLPAPLSPY NYGRSLFMPY QPSTSTGRAA  180
RFGFPALQII RSAEDAKGFD KSVIYLDSDK LCICRLTTKA KEVEKSKYAV FQITDHRGNN  240
PYTQDLNNRE GRSSKQHTNT VTCEISQNRK FDRILLCYRH ECFNETVSLR ELMGKQARKD  300
SPKGQSKGPA QQKLRGKRQI NKEVVDLRTL LIHCAQSVAA DDRQLATELI KKIRQHSSPD  360
GDCTQRLAFY LVDGLEARLA GIGSQLYRKF LEKRVTDEEV FKIYKLCLAA FPLLRASNAF  420
ANKTIVEASR GQLKVHIIDF GICFGFQWPS LIQQFAEQGV PPMLRITGID VTRPGFGTLE  480
ITEQAGKRLA DYANMFKVPF QYQGISSRFE NVQIEDLNIE EDELLIVNCL YRMKSLGDET  540
VSMNSARDRV LKIMRRINPK VFILGVVNGS YSSPFFITRF KELLFHYSSV FDMFDANAPR  600
DNEARKLLEG RVLAREAINI IACEGAERTD RPETYKQWQA RCLKAGFEQL PVDPAILNSI  660
IEMKKAIYHE DFVADEDSGW LLQGWKGRVM HAISKWKPNE SCSDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-423086981380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809503.10.0scarecrow-like protein 30
SwissprotO809331e-141SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A2S3H7970.0A0A2S3H797_9POAL; Uncharacterized protein
STRINGPavir.J13190.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-135GRAS family protein