PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C01042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | GRAS | ||||||||
Protein Properties | Length: 630aa MW: 71942.8 Da PI: 8.3464 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 357.6 | 1.8e-109 | 251 | 621 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 + L++cA+a++ ++l a +lL++++++asp+gd+ qRla yf+++L+arl++++ ++y++l ++t+ ++ l+a++lf+ ++P+ ++++ Pahal.C01042.1 251 RAFLIQCAQAIAFNNLPFAGELLKKIRQHASPYGDSSQRLALYFANGLEARLTGTGFRMYQKLMEKRTR---ATDMLKAYRLFVAACPFARVAYY 342 678**********************************************************99999998...9********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189 Nq+I + +++ +vHiiDf+is G+QWp+L++ +a+R++gpp+lRiTg+g p++g ++ +tg+rLa++Ae ++vpf+++ +a+r+e++ Pahal.C01042.1 343 FSNQTIADVLHRRPKVHIIDFGISLGFQWPSLMKRFAKREGGPPKLRITGIGVPQPGfrPCAMIDATGKRLAEYAEMFHVPFQYQG-IASRWENI 436 ********************************************************999999************************.7******* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284 +e+L+++++E+l+Vn+++q ++l de+ +++s+rd+vL+++k+++P+v+v+ + ++s+ Fl rf e l +ys+lfd++++ +++++e+ri Pahal.C01042.1 437 CTEDLNIDKDEVLIVNSMYQTKYLGDETEDIDSARDRVLRIMKKINPEVFVLGIMNGFYSSPFFLPRFREVLFHYSSLFDMYNTIVAQNDEARIL 531 *********************************************************************************************** PP GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +Er llg ++ nvvacegaer+er e++++W++r +aGFk++p+++ + k +k + d + ++ +sg+l++gWk+r + +vS+W+ Pahal.C01042.1 532 IERDLLGTDVLNVVACEGAERVERPESYKQWQARSLKAGFKQLPVNQAILKRSIDEKKKNYHDNFVINVDSGWLLQGWKGRIMHAVSSWK 621 *************************************************998877777777788*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.087 | 224 | 601 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.4E-107 | 251 | 621 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MESPDYCEIN SNMTLDYINR LLMEDTDEKA SIYQRHDALQ ATEKHFYDIL GQAYPSSPKN 60 TMIRTESHID CPQDSSNSYT ERAGSGSFAS DILGPQGMQL VANDWASERD RLSSQFHRGA 120 EEANKLVPSI ERLVFDLDSN GLSDYNQMIG AAIGQKIKHV NKIRNHPHAD LELLEARNSK 180 HLAISSSETI RDETFDRVLL CDWELHSAAA YLREMKVKEA RNSQQNVQRT GYGQGQVKSR 240 GKKKEEGIDL RAFLIQCAQA IAFNNLPFAG ELLKKIRQHA SPYGDSSQRL ALYFANGLEA 300 RLTGTGFRMY QKLMEKRTRA TDMLKAYRLF VAACPFARVA YYFSNQTIAD VLHRRPKVHI 360 IDFGISLGFQ WPSLMKRFAK REGGPPKLRI TGIGVPQPGF RPCAMIDATG KRLAEYAEMF 420 HVPFQYQGIA SRWENICTED LNIDKDEVLI VNSMYQTKYL GDETEDIDSA RDRVLRIMKK 480 INPEVFVLGI MNGFYSSPFF LPRFREVLFH YSSLFDMYNT IVAQNDEARI LIERDLLGTD 540 VLNVVACEGA ERVERPESYK QWQARSLKAG FKQLPVNQAI LKRSIDEKKK NYHDNFVINV 600 DSGWLLQGWK GRIMHAVSSW KPKESYTNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-59 | 240 | 623 | 8 | 380 | Protein SCARECROW |
5b3h_D | 3e-59 | 240 | 623 | 8 | 380 | Protein SCARECROW |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680688.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_022680689.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A2S3H786 | 0.0 | A0A2S3H786_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G089636_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-159 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C01042.1 |