PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C01042.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 630aa    MW: 71942.8 Da    PI: 8.3464
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C01042.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.61.8e-1092516212374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +  L++cA+a++ ++l  a +lL++++++asp+gd+ qRla yf+++L+arl++++ ++y++l  ++t+    ++ l+a++lf+ ++P+ ++++ 
  Pahal.C01042.1 251 RAFLIQCAQAIAFNNLPFAGELLKKIRQHASPYGDSSQRLALYFANGLEARLTGTGFRMYQKLMEKRTR---ATDMLKAYRLFVAACPFARVAYY 342
                     678**********************************************************99999998...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                       Nq+I + +++  +vHiiDf+is G+QWp+L++ +a+R++gpp+lRiTg+g p++g     ++ +tg+rLa++Ae ++vpf+++  +a+r+e++
  Pahal.C01042.1 343 FSNQTIADVLHRRPKVHIIDFGISLGFQWPSLMKRFAKREGGPPKLRITGIGVPQPGfrPCAMIDATGKRLAEYAEMFHVPFQYQG-IASRWENI 436
                     ********************************************************999999************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                      +e+L+++++E+l+Vn+++q ++l de+ +++s+rd+vL+++k+++P+v+v+   +  ++s+ Fl rf e l +ys+lfd++++ +++++e+ri 
  Pahal.C01042.1 437 CTEDLNIDKDEVLIVNSMYQTKYLGDETEDIDSARDRVLRIMKKINPEVFVLGIMNGFYSSPFFLPRFREVLFHYSSLFDMYNTIVAQNDEARIL 531
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +Er llg ++ nvvacegaer+er e++++W++r  +aGFk++p+++ + k      +k + d + ++ +sg+l++gWk+r + +vS+W+
  Pahal.C01042.1 532 IERDLLGTDVLNVVACEGAERVERPESYKQWQARSLKAGFKQLPVNQAILKRSIDEKKKNYHDNFVINVDSGWLLQGWKGRIMHAVSSWK 621
                     *************************************************998877777777788*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.087224601IPR005202Transcription factor GRAS
PfamPF035146.4E-107251621IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MESPDYCEIN SNMTLDYINR LLMEDTDEKA SIYQRHDALQ ATEKHFYDIL GQAYPSSPKN  60
TMIRTESHID CPQDSSNSYT ERAGSGSFAS DILGPQGMQL VANDWASERD RLSSQFHRGA  120
EEANKLVPSI ERLVFDLDSN GLSDYNQMIG AAIGQKIKHV NKIRNHPHAD LELLEARNSK  180
HLAISSSETI RDETFDRVLL CDWELHSAAA YLREMKVKEA RNSQQNVQRT GYGQGQVKSR  240
GKKKEEGIDL RAFLIQCAQA IAFNNLPFAG ELLKKIRQHA SPYGDSSQRL ALYFANGLEA  300
RLTGTGFRMY QKLMEKRTRA TDMLKAYRLF VAACPFARVA YYFSNQTIAD VLHRRPKVHI  360
IDFGISLGFQ WPSLMKRFAK REGGPPKLRI TGIGVPQPGF RPCAMIDATG KRLAEYAEMF  420
HVPFQYQGIA SRWENICTED LNIDKDEVLI VNSMYQTKYL GDETEDIDSA RDRVLRIMKK  480
INPEVFVLGI MNGFYSSPFF LPRFREVLFH YSSLFDMYNT IVAQNDEARI LIERDLLGTD  540
VLNVVACEGA ERVERPESYK QWQARSLKAG FKQLPVNQAI LKRSIDEKKK NYHDNFVINV  600
DSGWLLQGWK GRIMHAVSSW KPKESYTNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-592406238380Protein SCARECROW
5b3h_D3e-592406238380Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680688.10.0scarecrow-like protein 9
RefseqXP_022680689.10.0scarecrow-like protein 9
TrEMBLA0A2S3H7860.0A0A2S3H786_9POAL; Uncharacterized protein
STRINGGRMZM2G089636_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-159GRAS family protein