PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00971.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 274aa MW: 30610.4 Da PI: 9.9598 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.6 | 1.2e-31 | 63 | 113 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Pahal.C00971.2 63 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 113 79***********************************************95 PP | |||||||
2 | K-box | 88.3 | 1.5e-29 | 131 | 223 | 4 | 95 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 ss ++e + ++++qe+a+L+++i nLq+++R l+G+++ ++s+k+L+qLe +L+k+l kiR++Kne+l +++e++q++ +e+++++++ + Pahal.C00971.2 131 SSAAGtVAEVTIQHYKQESARLRQQITNLQNSNRTLVGDSIATMSHKDLKQLEARLDKGLVKIRARKNEVLSSELEYMQRRVDENERAQQTVN 223 44444689999***************************************************************************9999865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.7E-40 | 55 | 114 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.221 | 55 | 115 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.06E-45 | 56 | 129 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-33 | 56 | 128 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 57 | 111 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-33 | 57 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-26 | 64 | 111 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-33 | 77 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.2E-33 | 92 | 113 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.376 | 142 | 231 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.0E-20 | 142 | 220 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MHIQEVQATP STDIMQWGFS GQSTLTSTTG PKLKEPAVSS PGSGSVGAAA AAEKNGRGKI 60 EIKRIENTTN RQVTFCKRRN GLLKKAYELS VLCDAEVALI VFSSRGRLYE YSNNSVKATI 120 ERYKKATSDN SSAAGTVAEV TIQHYKQESA RLRQQITNLQ NSNRTLVGDS IATMSHKDLK 180 QLEARLDKGL VKIRARKNEV LSSELEYMQR RVDENERAQQ TVNMMGAPST SEYQQGFIPY 240 DPIRSFLQFN IMQQQPQFYS QQEDRKDFNV GGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 6e-21 | 56 | 143 | 2 | 89 | MEF2 CHIMERA |
6bz1_B | 6e-21 | 56 | 143 | 2 | 89 | MEF2 CHIMERA |
6bz1_C | 6e-21 | 56 | 143 | 2 | 89 | MEF2 CHIMERA |
6bz1_D | 6e-21 | 56 | 143 | 2 | 89 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | MZEZAG1A | 1e-176 | L18924.1 Corn ZAG1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807784.1 | 0.0 | MADS-box transcription factor 3-like | ||||
Swissprot | Q2V0P1 | 1e-116 | MAD58_ORYSJ; MADS-box transcription factor 58 | ||||
TrEMBL | A0A2S3H726 | 0.0 | A0A2S3H726_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00579.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-86 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00971.2 |