PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00971.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 287aa MW: 32245.2 Da PI: 9.8151 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.5 | 1.3e-31 | 62 | 112 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ Pahal.C00971.1 62 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 112 79***********************************************95 PP | |||||||
2 | K-box | 97.5 | 2e-32 | 130 | 227 | 4 | 100 |
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ss ++e + ++++qe+a+L+++i nLq+++R l+G+++ ++s+k+L+qLe +L+k+l kiR++Kne+l +++e++q++e elq++n +Lr++ Pahal.C00971.1 130 SSAAGtVAEVTIQHYKQESARLRQQITNLQNSNRTLVGDSIATMSHKDLKQLEARLDKGLVKIRARKNEVLSSELEYMQRREMELQNDNLYLRSR 224 44444689999**********************************************************************************99 PP K-box 98 lee 100 ++e Pahal.C00971.1 225 VDE 227 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.221 | 54 | 114 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-40 | 54 | 113 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.77E-45 | 55 | 128 | No hit | No description |
SuperFamily | SSF55455 | 3.4E-33 | 55 | 127 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 56 | 110 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-33 | 56 | 76 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-26 | 63 | 110 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-33 | 76 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-33 | 91 | 112 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 14.154 | 141 | 231 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.9E-24 | 141 | 225 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MHIQEVQATP STDIMWGFSG QSTLTSTTGP KLKEPAVSSP GSGSVGAAAA AEKNGRGKIE 60 IKRIENTTNR QVTFCKRRNG LLKKAYELSV LCDAEVALIV FSSRGRLYEY SNNSVKATIE 120 RYKKATSDNS SAAGTVAEVT IQHYKQESAR LRQQITNLQN SNRTLVGDSI ATMSHKDLKQ 180 LEARLDKGLV KIRARKNEVL SSELEYMQRR EMELQNDNLY LRSRVDENER AQQTVNMMGA 240 PSTSEYQQGF IPYDPIRSFL QFNIMQQQPQ FYSQQEDRKD FNVGGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 9e-21 | 55 | 142 | 2 | 89 | MEF2 CHIMERA |
6bz1_B | 9e-21 | 55 | 142 | 2 | 89 | MEF2 CHIMERA |
6bz1_C | 9e-21 | 55 | 142 | 2 | 89 | MEF2 CHIMERA |
6bz1_D | 9e-21 | 55 | 142 | 2 | 89 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Acts as a C-class protein in association with MADS3. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3), floral meristem determinacy and regulation of the carpel morphogenesis (whorl 4). Plays a more predominant role in floral meristem determinacy than MADS3. {ECO:0000269|PubMed:16326928}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | MZEZAG1A | 0.0 | L18924.1 Corn ZAG1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807784.1 | 0.0 | MADS-box transcription factor 3-like | ||||
Swissprot | Q2V0P1 | 1e-128 | MAD58_ORYSJ; MADS-box transcription factor 58 | ||||
TrEMBL | A0A2S3H737 | 0.0 | A0A2S3H737_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00579.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 7e-96 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00971.1 |