PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00969.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 319aa    MW: 33137.8 Da    PI: 5.0262
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00969.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88.3e-07446541
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     C+ +e  e++  C  ++  lC+ C  e H        H++ p
  Pahal.C00969.1  4 LCSACEAAEASVLCCADDAALCARCDREVHAAnrlagkHQRLP 46
                    7******99*********************6577888998877 PP
2zf-B_box27.37.7e-0960100337
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                     ++kC+ ++e  + +fC +++ llC++C ++ H        H
  Pahal.C00969.1  60 PPKCDICQECDAYFFCLEDRALLCRSCDVAVHTAnafvsaH 100
                     689****9988*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.879147IPR000315B-box-type zinc finger
SMARTSM003364.0E-10147IPR000315B-box-type zinc finger
CDDcd000211.51E-7347No hitNo description
SMARTSM003362.4E-1358105IPR000315B-box-type zinc finger
PfamPF006431.8E-76092IPR000315B-box-type zinc finger
CDDcd000214.51E-961105No hitNo description
PROSITE profilePS501199.08663105IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MKVLCSACEA AEASVLCCAD DAALCARCDR EVHAANRLAG KHQRLPLLAP GGQSAAAVSP  60
PKCDICQECD AYFFCLEDRA LLCRSCDVAV HTANAFVSAH RRFLLTGVQV GQELEDPAPE  120
QPEPPSPPPA KSDPAPPLYG EGDFSWAAGV TGSLADWSGV NEQFGSPAPR HAEAGSRATP  180
KRSPRAPAFG AGHGQGRVAG GVMDWPLGEF FRGVSDFNCG FSFGESGTSK ADSGKLGGSA  240
GGSPYYRSSS EDRDANELFG QVPEIQWSVP ELPSPPTASG LHWQHGGGPD STAFVPDICS  300
PDSFPTAAAA GAKPQRNR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808322.10.0B-box zinc finger protein 22-like
TrEMBLA0A2S3H7880.0A0A2S3H788_9POAL; Uncharacterized protein
STRINGSi022650m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-38light-regulated zinc finger protein 1