PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00887.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 225aa MW: 24296.6 Da PI: 9.9745 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.8 | 1.1e-12 | 14 | 56 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++ Ed l + v+++G +W+++++ ++ gR++ +c++rw++ Pahal.C00887.1 14 SWSKGEDTVLREQVRLHGEQSWERVSAALP-GRSARSCRLRWYQ 56 7*****************************.***********97 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.2e-15 | 67 | 110 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++++eEd l+v +++ ++++ W+tIar ++ gRt+ ++ksr++++l Pahal.C00887.1 67 PFSAEEDALIVACHRAYPNK-WATIARFLP-GRTDSDVKSRYNTVL 110 79******************.*********.************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.164 | 7 | 62 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-14 | 9 | 62 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.1E-23 | 10 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.5E-10 | 11 | 60 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-12 | 14 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.96E-11 | 14 | 58 | No hit | No description |
PROSITE profile | PS51294 | 16.554 | 64 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-13 | 64 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-16 | 66 | 114 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.5E-12 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.80E-12 | 67 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MDMDTPMAAK KSSSWSKGED TVLREQVRLH GEQSWERVSA ALPGRSARSC RLRWYQRLAH 60 AVAAGRPFSA EEDALIVACH RAYPNKWATI ARFLPGRTDS DVKSRYNTVL REQLDLAPPP 120 RRHPDGTLPL FPLVPGDVRR ASGRGGTVLR RQPPEEAAGD DQSGACLALF PLAPGDLTKG 180 SNSAREAAAM DFDVSAGGLP EMRLSPAPTA MAAFRAMVQA VRAP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-20 | 15 | 115 | 10 | 109 | B-MYB |
3osf_A | 8e-20 | 7 | 109 | 6 | 106 | MYB21 |
3osf_D | 8e-20 | 7 | 109 | 6 | 106 | MYB21 |
3osg_A | 8e-20 | 7 | 109 | 6 | 106 | MYB21 |
3osg_D | 8e-20 | 7 | 109 | 6 | 106 | MYB21 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805748.1 | 1e-156 | transcription factor MYB44-like | ||||
TrEMBL | A0A2T8KHG9 | 1e-155 | A0A2T8KHG9_9POAL; Uncharacterized protein | ||||
STRING | Si024031m | 5e-97 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 2e-27 | myb domain protein 77 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00887.1 |