PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00878.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 959aa MW: 105914 Da PI: 5.2062 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.8 | 1.2e-18 | 48 | 94 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+e d++l +av+ + g++Wk+Ia+ ++ gRt+ qc +rwqk+l Pahal.C00878.1 48 KGNWTAEQDDILRKAVETYKGKNWKKIAESFP-GRTDVQCLHRWQKVL 94 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 61.2 | 2.2e-19 | 100 | 146 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++++ v++lG++ W+tIa+ ++ gR +kqc++rw+++l Pahal.C00878.1 100 KGPWSKEEDEIIIEMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 146 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.2 | 2.6e-15 | 152 | 194 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ +l++a++ +G++ W+ + ++ gRt++ +k++w+ Pahal.C00878.1 152 KDAWTQEEEIKLIHAHQTYGNK-WAELTKFLP-GRTDNAIKNHWH 194 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.672 | 43 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-15 | 46 | 101 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.7E-17 | 47 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-16 | 48 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.67E-14 | 50 | 94 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 50 | 110 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 32.066 | 95 | 150 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-31 | 97 | 193 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-18 | 99 | 148 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-17 | 100 | 146 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.18E-15 | 102 | 146 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-26 | 111 | 152 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-14 | 151 | 199 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.607 | 151 | 201 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.9E-13 | 152 | 194 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 153 | 201 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.35E-11 | 154 | 194 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 959 aa Download sequence Send to blast |
MTSEGQMTSK GTEASAPAVP PDEGVRREPQ KGRLPNGRTT GPARRSSKGN WTAEQDDILR 60 KAVETYKGKN WKKIAESFPG RTDVQCLHRW QKVLNPELVK GPWSKEEDEI IIEMVNKLGP 120 KKWSTIAQAL PGRIGKQCRE RWHNHLNPGI NKDAWTQEEE IKLIHAHQTY GNKWAELTKF 180 LPGRTDNAIK NHWHSSVKKK IDSYRASGLL AQFQGLAPVE YTTGGLSVDS SSAMANQISE 240 DSCLNVFREV EDSTEFSQSS FAKGSCSQEE QTDVALGSHL NVHESLCQDG FTNADNAASA 300 LPEMHHQLST SDMDQDKHFQ DELSQGMDLD KHLQLQQEFS QGMDLHLDID EVPNNFVITD 360 SQASNELTGQ FQDTQIMHSS ENDGVSLIPY AVTPCVSILP SVPGCENNIN MMCEVGIKNE 420 DHFQSEQWQN ISIQPGSYSS EAASNFSVPL YPLQTSEPAT MMGDPLYYQS SVTSLPPSFI 480 SSDGASNASD VKFEMSRFPV SHQDLEIKTC HNSSGDPDQS SYINSEGDRN RTSEPMDSIP 540 DSEKKQLVDL EQSCLEPTAY IGKEALSSHG DSVLSKKEDA GALCYEPPCF ASFEVPFVSC 600 ELVTSSDLPE YSPLGIRELM RSSLNFPTPV RLWGSPTRDG SPDAVLKNAA KSFVCTPSIM 660 KKRPRDLSSP SPDVRNEKKL NTEKDCGRSG MYSTRIGKSC MDTPDDFVDL VSPTRKTAFQ 720 KKLKLSQENK ENVNQNTDQG ENEGNAKHSA GILTDSSVDN LNTPKHGPNY ESQRLNTSAK 780 AWSNSKDIIF SRSKPSELLV EKSIPCIDAD HEYVNILADT PGIKRGLESP SAWKSPLFTP 840 FQDAYFMSPA SRAFDALGLV KQINEQSAAA LEEAHEVLAS GSPWKRHCKE NSDKENTAWK 900 NEVGTSKPPS KLMAEGRVLD FNECSTPVRK KEDKKMDLAL GGSASSPVAS SYLRMNVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-65 | 48 | 201 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-65 | 48 | 201 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808581.1 | 0.0 | transcription factor MYB3R-1-like | ||||
Refseq | XP_025808582.1 | 0.0 | transcription factor MYB3R-1-like | ||||
TrEMBL | A0A2S3H6W6 | 0.0 | A0A2S3H6W6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J07395.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 1e-104 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00878.1 |