PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 223aa MW: 23069.2 Da PI: 5.9556 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00026 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Pahal.C00870.1 59 YECVFCKRGFTTAQALGGHMNIH 81 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.61E-6 | 57 | 85 | No hit | No description |
PROSITE profile | PS50157 | 10.99 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MDSGSNMESK AAASGDEAMT SPGPDSAAAA GGAGEEEVAG EEAAASPPAP AAASPRPYYE 60 CVFCKRGFTT AQALGGHMNI HRRDRAKPPA RDSPTGITSV SRNVECYNKY RHLVSPYPPA 120 QSSSIPVGAG SSFGMYYVSS GAEAAAGARL DAEGGSPSSV SPRELSLFGE ANRDQDLHLG 180 LGRQGHIGGG SRTPEGGSER QQSSEPEREL DLELRLGRRP RH* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC145477 | 5e-38 | AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence. | |||
GenBank | AP014961 | 5e-38 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805746.1 | 1e-158 | uncharacterized protein LOC112884551 | ||||
TrEMBL | A0A2S3H6V7 | 1e-157 | A0A2S3H6V7_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7E6L4 | 1e-157 | A0A2T7E6L4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J09457.1.p | 1e-109 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8111 | 27 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 5e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00870.1 |