PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C00829.4

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 817aa MW: 90878.3 Da PI: 6.9507

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C00829.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.7	4e-27	473	523	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sle++++yF +++k+AAk+Lgvc+T++KriCRq+GI+RWP+R+i+++ Pahal.C00829.4 473 EKTFSLEVIQHYFTGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRQISKV 523 8999********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.961	462	543	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-23	476	523	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.03E-23	712	807	No hit	No description
SMART	SM00666	1.9E-25	722	804	IPR000270	PB1 domain
PROSITE profile	PS51745	19.68	722	804	IPR000270	PB1 domain
Pfam	PF00564	1.5E-17	723	803	IPR000270	PB1 domain
CDD	cd06407	5.53E-33	723	803	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.0E-25	723	803	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence Send to blast
MVEDYSDSSY FLKERLTLAL RYFKESTNQH LLVQVWVPIR KGDRYMLSTS GQPFVLDQRS 60 IGLFQYRAVS MMYMFSVDGD NVKELGLPGR VYKQKVPEWT PNVQYYSSTE YARLNHAISY 120 NVHGTVALPV FDPSTKSCIA VVELIMTSKK VNYASEIGKV SKALEAVNLK STEVVEHPYV 180 QIFNEGHQAT LVEMLEVLTV ICEELKLPLA QTWVPCKYQN LLVPCGVKKS NFNIHGSCAQ 240 ELCMSTSDVV FHVIDAHMWG FRDACVEHHL QKGQGVSGKA FILRRPCFSK DVTRFSKMEY 300 PLVHYARMFG LAGCFSVCLQ SAYTGNDDYV LEFFLPPDCR EDDEQKVLLE SILTLLRQHL 360 HSLHVATDEG SNEELQVDAI TVIDNNETKD EYVQHPNFEG GINASHESNA HGIHESDRQK 420 RIASSEYEMC LSPENSTKCN GKLFVGPNGG CTSDSLLPDN NSKHHGRRRG KAEKTFSLEV 480 IQHYFTGSLK NAAKSLGVCP TTMKRICRQH GISRWPSRQI SKVNRSISKL KKVIESVEGS 540 ESAFTLTSIT GPLPVPFSPS NPINVKNGRQ TEVTDLSIPS VQENRGSSSQ IKLLQNDDRL 600 GMLIPQRSFL ANISRQIEQE KALNLRSSSG EPSTNSGTSE DSCLGSPANR TFVSTLMEQQ 660 QNMGKPDRFT KGPFQTQDLL LPGLFVNGSG SSKNCKSHIT AAVNEPAVVP LGSLMSVHNS 720 GIVTVKARYK EDLLRFRFPC SASIIDLKDE VAKRIQIDVG VFDIKYLDDD HEWVKLTCDA 780 DLEECVEISR LSGSNVLRLL VTDIAPILGS SCGSTG*

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence Send to blast

MVEDYSDSSY FLKERLTLAL RYFKESTNQH LLVQVWVPIR KGDRYMLSTS GQPFVLDQRS  60
IGLFQYRAVS MMYMFSVDGD NVKELGLPGR VYKQKVPEWT PNVQYYSSTE YARLNHAISY  120
NVHGTVALPV FDPSTKSCIA VVELIMTSKK VNYASEIGKV SKALEAVNLK STEVVEHPYV  180
QIFNEGHQAT LVEMLEVLTV ICEELKLPLA QTWVPCKYQN LLVPCGVKKS NFNIHGSCAQ  240
ELCMSTSDVV FHVIDAHMWG FRDACVEHHL QKGQGVSGKA FILRRPCFSK DVTRFSKMEY  300
PLVHYARMFG LAGCFSVCLQ SAYTGNDDYV LEFFLPPDCR EDDEQKVLLE SILTLLRQHL  360
HSLHVATDEG SNEELQVDAI TVIDNNETKD EYVQHPNFEG GINASHESNA HGIHESDRQK  420
RIASSEYEMC LSPENSTKCN GKLFVGPNGG CTSDSLLPDN NSKHHGRRRG KAEKTFSLEV  480
IQHYFTGSLK NAAKSLGVCP TTMKRICRQH GISRWPSRQI SKVNRSISKL KKVIESVEGS  540
ESAFTLTSIT GPLPVPFSPS NPINVKNGRQ TEVTDLSIPS VQENRGSSSQ IKLLQNDDRL  600
GMLIPQRSFL ANISRQIEQE KALNLRSSSG EPSTNSGTSE DSCLGSPANR TFVSTLMEQQ  660
QNMGKPDRFT KGPFQTQDLL LPGLFVNGSG SSKNCKSHIT AAVNEPAVVP LGSLMSVHNS  720
GIVTVKARYK EDLLRFRFPC SASIIDLKDE VAKRIQIDVG VFDIKYLDDD HEWVKLTCDA  780
DLEECVEISR LSGSNVLRLL VTDIAPILGS SCGSTG*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805501.1	0.0	protein NLP3-like isoform X1
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A2S3H6R6	0.0	A0A2S3H6R6_9POAL; Uncharacterized protein
STRING	Pavir.Ca00444.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.C00829.4