PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00829.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Nin-like | ||||||||
Protein Properties | Length: 864aa MW: 95639.5 Da PI: 6.6443 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 85.6 | 4.3e-27 | 554 | 604 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sle++++yF +++k+AAk+Lgvc+T++KriCRq+GI+RWP+R+i+++ Pahal.C00829.2 554 EKTFSLEVIQHYFTGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRQISKV 604 8999********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.961 | 543 | 624 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.0E-23 | 557 | 604 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.19E-23 | 759 | 854 | No hit | No description |
PROSITE profile | PS51745 | 19.68 | 769 | 851 | IPR000270 | PB1 domain |
SMART | SM00666 | 1.9E-25 | 769 | 851 | IPR000270 | PB1 domain |
CDD | cd06407 | 4.70E-33 | 770 | 850 | No hit | No description |
Pfam | PF00564 | 1.6E-17 | 770 | 850 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 2.2E-25 | 770 | 850 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 864 aa Download sequence Send to blast |
MEFDFDSPDG GDAWLLDAMA TSLHFSAASP PLWPCGDPHH SSVVPLDTAA PQDDAPGARS 60 GKSEITKKGE PINGKCQVHL SMVEDYSDSS YFLKERLTLA LRYFKESTNQ HLLVQVWVPI 120 RKGDRYMLST SGQPFVLDQR SIGLFQYRAV SMMYMFSVDG DNVKELGLPG RVYKQKVPEW 180 TPNVQYYSST EYARLNHAIS YNVHGTVALP VFDPSTKSCI AVVELIMTSK KVNYASEIGK 240 VSKALEAVNL KSTEVVEHPY VQIFNEGHQA TLVEMLEVLT VICEELKLPL AQTWVPCKYQ 300 NLLVPCGVKK SNFNIHGSCA QELCMSTSDV VFHVIDAHMW GFRDACVEHH LQKGQGVSGK 360 AFILRRPCFS KDVTRFSKME YPLVHYARMF GLAGCFSVCL QSAYTGNDDY VLEFFLPPDC 420 REDDEQKVLL ESILTLLRQH LHSLHVATDE GSNEELQVDA ITVIDNNETK DEYVQHPNFE 480 GGINASHESN AHGIHESDRQ KRIASSEYEM CLSPENSTKC NGKLFVGPNG GCTSDSLLPD 540 NNSKHHGRRR GKAEKTFSLE VIQHYFTGSL KNAAKSLGVC PTTMKRICRQ HGISRWPSRQ 600 ISKVNRSISK LKKVIESVEG SESAFTLTSI TGPLPVPFSP SNPINVKNGR QTERSFLANI 660 SRQIEQEKAL NLRSSSGEPS TNSGTSEDSC LGSPANRTFV STLMEQQQNM GKPDRFTKGP 720 FQTQDLLLPG LFVNGSGSSK NCKSHITAAV NEPAVVPLGS LMSVHNSGIV TVKARYKEDL 780 LRFRFPCSAS IIDLKDEVAK RIQIDVGVFD IKYLDDDHEW VKLTCDADLE ECVEISRLSG 840 SNVLRLLVTD IAPILGSSCG STG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805501.1 | 0.0 | protein NLP3-like isoform X1 | ||||
Swissprot | Q5NB82 | 0.0 | NLP3_ORYSJ; Protein NLP3 | ||||
TrEMBL | A0A2S3H6R7 | 0.0 | A0A2S3H6R7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00444.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64530.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00829.2 |