PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C00829.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 898aa MW: 99374.7 Da PI: 6.5884

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C00829.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.6	4.5e-27	554	604	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sle++++yF +++k+AAk+Lgvc+T++KriCRq+GI+RWP+R+i+++ Pahal.C00829.1 554 EKTFSLEVIQHYFTGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRQISKV 604 8999********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.961	543	624	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-23	557	604	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.29E-23	793	888	No hit	No description
SMART	SM00666	1.9E-25	803	885	IPR000270	PB1 domain
PROSITE profile	PS51745	19.68	803	885	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.3E-25	804	884	No hit	No description
CDD	cd06407	5.58E-33	804	884	No hit	No description
Pfam	PF00564	1.7E-17	804	884	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MEFDFDSPDG GDAWLLDAMA TSLHFSAASP PLWPCGDPHH SSVVPLDTAA PQDDAPGARS 60 GKSEITKKGE PINGKCQVHL SMVEDYSDSS YFLKERLTLA LRYFKESTNQ HLLVQVWVPI 120 RKGDRYMLST SGQPFVLDQR SIGLFQYRAV SMMYMFSVDG DNVKELGLPG RVYKQKVPEW 180 TPNVQYYSST EYARLNHAIS YNVHGTVALP VFDPSTKSCI AVVELIMTSK KVNYASEIGK 240 VSKALEAVNL KSTEVVEHPY VQIFNEGHQA TLVEMLEVLT VICEELKLPL AQTWVPCKYQ 300 NLLVPCGVKK SNFNIHGSCA QELCMSTSDV VFHVIDAHMW GFRDACVEHH LQKGQGVSGK 360 AFILRRPCFS KDVTRFSKME YPLVHYARMF GLAGCFSVCL QSAYTGNDDY VLEFFLPPDC 420 REDDEQKVLL ESILTLLRQH LHSLHVATDE GSNEELQVDA ITVIDNNETK DEYVQHPNFE 480 GGINASHESN AHGIHESDRQ KRIASSEYEM CLSPENSTKC NGKLFVGPNG GCTSDSLLPD 540 NNSKHHGRRR GKAEKTFSLE VIQHYFTGSL KNAAKSLGVC PTTMKRICRQ HGISRWPSRQ 600 ISKVNRSISK LKKVIESVEG SESAFTLTSI TGPLPVPFSP SNPINVKNGR QTEVTDLSIP 660 SVQENRGSSS QIKLLQNDDR LGMLIPQRSF LANISRQIEQ EKALNLRSSS GEPSTNSGTS 720 EDSCLGSPAN RTFVSTLMEQ QQNMGKPDRF TKGPFQTQDL LLPGLFVNGS GSSKNCKSHI 780 TAAVNEPAVV PLGSLMSVHN SGIVTVKARY KEDLLRFRFP CSASIIDLKD EVAKRIQIDV 840 GVFDIKYLDD DHEWVKLTCD ADLEECVEIS RLSGSNVLRL LVTDIAPILG SSCGSTG*

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MEFDFDSPDG GDAWLLDAMA TSLHFSAASP PLWPCGDPHH SSVVPLDTAA PQDDAPGARS  60
GKSEITKKGE PINGKCQVHL SMVEDYSDSS YFLKERLTLA LRYFKESTNQ HLLVQVWVPI  120
RKGDRYMLST SGQPFVLDQR SIGLFQYRAV SMMYMFSVDG DNVKELGLPG RVYKQKVPEW  180
TPNVQYYSST EYARLNHAIS YNVHGTVALP VFDPSTKSCI AVVELIMTSK KVNYASEIGK  240
VSKALEAVNL KSTEVVEHPY VQIFNEGHQA TLVEMLEVLT VICEELKLPL AQTWVPCKYQ  300
NLLVPCGVKK SNFNIHGSCA QELCMSTSDV VFHVIDAHMW GFRDACVEHH LQKGQGVSGK  360
AFILRRPCFS KDVTRFSKME YPLVHYARMF GLAGCFSVCL QSAYTGNDDY VLEFFLPPDC  420
REDDEQKVLL ESILTLLRQH LHSLHVATDE GSNEELQVDA ITVIDNNETK DEYVQHPNFE  480
GGINASHESN AHGIHESDRQ KRIASSEYEM CLSPENSTKC NGKLFVGPNG GCTSDSLLPD  540
NNSKHHGRRR GKAEKTFSLE VIQHYFTGSL KNAAKSLGVC PTTMKRICRQ HGISRWPSRQ  600
ISKVNRSISK LKKVIESVEG SESAFTLTSI TGPLPVPFSP SNPINVKNGR QTEVTDLSIP  660
SVQENRGSSS QIKLLQNDDR LGMLIPQRSF LANISRQIEQ EKALNLRSSS GEPSTNSGTS  720
EDSCLGSPAN RTFVSTLMEQ QQNMGKPDRF TKGPFQTQDL LLPGLFVNGS GSSKNCKSHI  780
TAAVNEPAVV PLGSLMSVHN SGIVTVKARY KEDLLRFRFP CSASIIDLKD EVAKRIQIDV  840
GVFDIKYLDD DHEWVKLTCD ADLEECVEIS RLSGSNVLRL LVTDIAPILG SSCGSTG*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805501.1	0.0	protein NLP3-like isoform X1
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A2S3H6V2	0.0	A0A2S3H6V2_9POAL; Uncharacterized protein
STRING	Pavir.Ca00444.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4778	36	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.C00829.1