PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C00753.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 383aa MW: 41046.3 Da PI: 5.006

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C00753.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	41.2	3.2e-13	302	341	3	42
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIk 42 ++++l dl++yF+lp+++AA++Lgvc+TvLK + R++ Ik Pahal.C00753.1 302 SNLQLGDLARYFHLPMTQAARHLGVCATVLKTTSRRFHIK 341 799********************************99885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	9.0E-11	303	341	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MADGHGEGTD WEGPYDLLLM QDDFDDVMYL LDIPAVVLDP APLALAAQAQ NVTAGPPGDN 60 LPDPEWPAKL NNDDSVDSRA PTHNAAIAGD LPRSTQYVGA GTSATASASS SPHDENALLD 120 CTGCHVLREV LHSNGLEAVK LRVHGAAGLF YHATLEVYRI NSEGLATALT HQSYIEGQDY 180 VWVKHYLTDY AQQRAGAGYT VVHDSISAFH DALCVGMNYG GNADGDDRRE EMQMAAAAGN 240 GGGSDQQQEL AGTDDAAQSL IHQGNVPAAA GPSEPSASNE QEQREVRQVG RSALAIQRER 300 ASNLQLGDLA RYFHLPMTQA ARHLGVCATV LKTTSRRFHI KSIDNHIAKL RRTGDNGGTA 360 AKREMERLTE SRRKIYADLL GQ*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MADGHGEGTD WEGPYDLLLM QDDFDDVMYL LDIPAVVLDP APLALAAQAQ NVTAGPPGDN  60
LPDPEWPAKL NNDDSVDSRA PTHNAAIAGD LPRSTQYVGA GTSATASASS SPHDENALLD  120
CTGCHVLREV LHSNGLEAVK LRVHGAAGLF YHATLEVYRI NSEGLATALT HQSYIEGQDY  180
VWVKHYLTDY AQQRAGAGYT VVHDSISAFH DALCVGMNYG GNADGDDRRE EMQMAAAAGN  240
GGGSDQQQEL AGTDDAAQSL IHQGNVPAAA GPSEPSASNE QEQREVRQVG RSALAIQRER  300
ASNLQLGDLA RYFHLPMTQA ARHLGVCATV LKTTSRRFHI KSIDNHIAKL RRTGDNGGTA  360
AKREMERLTE SRRKIYADLL GQ*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321666.1	2e-94	uncharacterized protein LOC8084238
TrEMBL	A0A2T8KHA6	0.0	A0A2T8KHA6_9POAL; Uncharacterized protein
STRING	Pavir.Ca00391.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Link Out ? help Back to Top
Phytozome	Pahal.C00753.1