PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C00710.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

DBB

Protein Properties

Length: 208aa MW: 20946.5 Da PI: 5.9047

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C00710.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.9	1.5e-06	5	46	6	41
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +++ e+ C ++ lC+ C + H+ H++v Pahal.C00710.1 5 CDACGRAEAAVLCCADEAALCRRCDAAVHSAnrlagrHSRVA 46 *****************************6577888888775 PP
2	zf-B_box	24.9	4.1e-08	68	103	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 + C+ ++ek +fC +++ llC+ C ++ H H Pahal.C00710.1 68 PACDICQEKTGYFFCLEDRALLCRPCDVAVHAAgaH 103 67****************************965673 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.712	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	5.81E-6	5	47	No hit	No description
SMART	SM00336	4.9E-8	5	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.101	65	112	IPR000315	B-box-type zinc finger
SMART	SM00336	5.0E-12	65	112	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.9E-6	68	103	IPR000315	B-box-type zinc finger
CDD	cd00021	3.55E-5	68	94	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MKIGCDACGR AEAAVLCCAD EAALCRRCDA AVHSANRLAG RHSRVALLPS TAGPSPPDAI 60 VDGSGSHPAC DICQEKTGYF FCLEDRALLC RPCDVAVHAA GAHVASHRRF LITGVRVGAG 120 VDAPGVVVSP STSSGNGSSS APSNPTTMPD KVRPSLSASA AAAREGLGGQ QWPWSEFLAD 180 DAGVGMDQQD LCCPAGISEP GSSSLTG*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269\|PubMed:18182030, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:18796637, ECO:0000269\|PubMed:21070414, ECO:0000269\|PubMed:21427283}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:18182030}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805930.1	1e-147	B-box zinc finger protein 23-like
Swissprot	Q9SYM2	4e-42	BBX22_ARATH; B-box zinc finger protein 22
TrEMBL	A0A2S3H6K6	1e-145	A0A2S3H6K6_9POAL; Uncharacterized protein
STRING	Si024510m	6e-97	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12151	25	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	4e-32	light-regulated zinc finger protein 1

Link Out ? help Back to Top
Phytozome	Pahal.C00710.1