PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00703.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 282aa    MW: 31717.2 Da    PI: 8.8497
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00703.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.31.3e-302777151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++ rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  Pahal.C00703.1 27 KRIENNTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 77
                    79***********************************************95 PP
2K-box101.31.3e-331001938100
           K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       le + ++++qqe+akL+++i++Lq+++Rhl+G+++e+LslkeL+qLe++Lek+++kiR++K+ell ++i+++ k+e elq+++++Lr+k+ee
  Pahal.C00703.1 100 PlLELNAQQYYQQESAKLRNQIQMLQNTNRHLVGDSVENLSLKELKQLESRLEKGISKIRARKSELLSAEINYMVKRETELQNDHMNLRTKIEE 193
                     45677889************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.5E-411978IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.5431979IPR002100Transcription factor, MADS-box
CDDcd002651.62E-442096No hitNo description
SuperFamilySSF554551.7E-322093IPR002100Transcription factor, MADS-box
PROSITE patternPS0035002175IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-322141IPR002100Transcription factor, MADS-box
PfamPF003191.8E-262875IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-324156IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-325677IPR002100Transcription factor, MADS-box
PfamPF014863.8E-24105191IPR002487Transcription factor, K-box
PROSITE profilePS5129714.983107197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048283Biological Processindeterminate inflorescence morphogenesis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MREESFLLLA NQLAEISSMG RGRIEIKRIE NNTSRQVTFC KRRNGLLKKA YELSVLCDAE  60
VALIVFSSRG RLYEYSNNSV KATIERYKKA HAVGSSSGAP LLELNAQQYY QQESAKLRNQ  120
IQMLQNTNRH LVGDSVENLS LKELKQLESR LEKGISKIRA RKSELLSAEI NYMVKRETEL  180
QNDHMNLRTK IEEGEQQLQQ VTVARSAAVA AASAELNPFF QMDTKCFFPA GPFAGLDMKC  240
FFPGGLQMLE AHRQILTTEL NLGYQLAPPS GDDGINNPHQ F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P4e-191987169Myocyte-specific enhancer factor 2B
1tqe_Q4e-191987169Myocyte-specific enhancer factor 2B
1tqe_R4e-191987169Myocyte-specific enhancer factor 2B
1tqe_S4e-191987169Myocyte-specific enhancer factor 2B
6c9l_A4e-191987169Myocyte-specific enhancer factor 2B
6c9l_B4e-191987169Myocyte-specific enhancer factor 2B
6c9l_C4e-191987169Myocyte-specific enhancer factor 2B
6c9l_D4e-191987169Myocyte-specific enhancer factor 2B
6c9l_E4e-191987169Myocyte-specific enhancer factor 2B
6c9l_F4e-191987169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU315220.0U31522.1 Zea Mays MADS box protein (ZmOV23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807446.10.0MADS-box transcription factor 13-like
SwissprotQ2QW531e-125MAD13_ORYSJ; MADS-box transcription factor 13
TrEMBLA0A2T7E6180.0A0A2T7E618_9POAL; Uncharacterized protein
STRINGPavir.Cb01898.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42830.14e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Gindullis F,Rose A,Patel S,Meier I
    Four signature motifs define the first class of structurally related large coiled-coil proteins in plants.
    BMC Genomics, 2002. 3: p. 9
    [PMID:11972898]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Yamaki S,Satoh H,Nagato Y
    Gypsy embryo specifies ovule curvature by regulating ovule/integument development in rice.
    Planta, 2005. 222(3): p. 408-17
    [PMID:16001259]
  4. Dreni L, et al.
    The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice.
    Plant J., 2007. 52(4): p. 690-9
    [PMID:17877710]
  5. Yamaki S,Nagato Y,Kurata N,Nonomura K
    Ovule is a lateral organ finally differentiated from the terminating floral meristem in rice.
    Dev. Biol., 2011. 351(1): p. 208-16
    [PMID:21146515]
  6. Li H,Liang W,Yin C,Zhu L,Zhang D
    Genetic interaction of OsMADS3, DROOPING LEAF, and OsMADS13 in specifying rice floral organ identities and meristem determinacy.
    Plant Physiol., 2011. 156(1): p. 263-74
    [PMID:21444646]
  7. Li H, et al.
    Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
    Plant Cell, 2011. 23(7): p. 2536-52
    [PMID:21784949]