PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00649.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 27668.8 Da PI: 10.3376 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.1 | 1.8e-17 | 23 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia+++ gR++k+c++rw++ Pahal.C00649.1 23 RGHWRPGEDEKLRQLVEQYGPQNWNSIAAKLD-GRSGKSCRLRWFNQ 68 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 54.9 | 2e-17 | 77 | 119 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ E+e+l++a++ +G++ W++I+r ++ gRt++ +k++w+ + Pahal.C00649.1 77 PFTAAEEERLLQAHRAHGNR-WALISRLFP-GRTDNAVKNHWHVV 119 79******************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.411 | 18 | 69 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.68E-29 | 21 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-13 | 22 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 23 | 68 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-26 | 24 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.23E-14 | 26 | 67 | No hit | No description |
PROSITE profile | PS51294 | 24.213 | 70 | 124 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 77 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 77 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.05E-12 | 77 | 120 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MAPSSTTTTS DKANSRSPSS CPRGHWRPGE DEKLRQLVEQ YGPQNWNSIA AKLDGRSGKS 60 CRLRWFNQLD PRINQRPFTA AEEERLLQAH RAHGNRWALI SRLFPGRTDN AVKNHWHVVM 120 ARRRRSHQRS AGTLLAASAT GCSPPPRRPP FQCFHFGAPP ASAKTTTGNL CFATPGSGPS 180 SLISSSSGTF SVRNCHVPIN VAFSSPSEAA AAPDDHRHGM GKDEHGAGGN DDDEDGGAAA 240 AKRKDVPFID FLGVGI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-30 | 23 | 123 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-30 | 23 | 123 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 129 | RRSHQRS |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972498 | 1e-115 | EU972498.1 Zea mays clone 382267 myb-like DNA-binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809406.1 | 0.0 | transcription factor CSA-like | ||||
TrEMBL | A0A2T8KH59 | 0.0 | A0A2T8KH59_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb01957.1.p | 1e-142 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 6e-62 | myb domain protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00649.1 |