PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00569.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 470aa    MW: 51270.7 Da    PI: 6.6067
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00569.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.27.7e-07227248223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++Cgk F+r  nL+ H+r H
  Pahal.C00569.1 227 FCTICGKGFKRDANLRMHMRGH 248
                     6*******************98 PP
2zf-C2H211.10.0013345359620
                     TTEEESSHHHHHHHH CS
         zf-C2H2   6 CgksFsrksnLkrHi 20 
                     Cg+sFsrk+ L  H 
  Pahal.C00569.1 345 CGTSFSRKDKLFAHV 359
                     **************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-5225250No hitNo description
SMARTSM003550.0026226248IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.03226253IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.9E-6227277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280228248IPR007087Zinc finger, C2H2
SMARTSM0035588275308IPR015880Zinc finger, C2H2-like
SMARTSM0035537313335IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDHSQNHIHD QSAANLCYQF GSDNPFLGMG IQQPFAPFTS PFGACSSTNI PHMDWDPATM  60
LDNLTFIEEK IHQVKNVIRT MVDNGSQLPC RPGELGQQQQ VVNADLTCLI VQLISTAGSL  120
LPSLKNSSFL SHPPAGHTGI VKHVGSSSSF VPNELCSPED YEELFKGFTD GAMEGGIEID  180
NVLVEELDAK DGDEGGDAGM DGEILPPGSY ELLQLEKDEI LAPHTHFCTI CGKGFKRDAN  240
LRMHMRGHGD EYKSPAALAK PPRDTSAEHE VVKRYSCPFV DCKRNKLHKN FQPLKTILCV  300
KNHYKRSHCE KSYTCSRCHT KKFSVMADLK THEKHCGRNK WLCSCGTSFS RKDKLFAHVA  360
LFQGHTPALP TEAKTSSDQI GAVGSHQEPA KLPNSMGSSF MWGTSSGGNS ALDIKGFDGC  420
SDDFLSTVNF GSFNFSFGPA DGFTGEPSGG SFPMMPSEHF QNAQKKGKN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809367.10.0LOW QUALITY PROTEIN: zinc finger protein STAR3-like
SwissprotQ943I61e-142STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A2S3H6680.0A0A2S3H668_9POAL; Uncharacterized protein
STRINGPavir.J02020.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-132C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]