PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00492.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 889aa    MW: 96470.9 Da    PI: 7.0001
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00492.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000696947311355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     R+ i +++ eLrel+P+ a      K s  + Lek+++++  Lq
  Pahal.C00492.1 694 RQLIQDRIKELRELVPNgA------KCSIDALLEKTIKHMLFLQ 731
                     67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.4E-296154IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.804681730IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-4694739IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MAVGDALRRL CEEVGWSYAV FWKAIGAADP VHLVWEDGFC GHASCSAGSE APEAGCEPGS  60
SVCTLVRKIM ASQIHVVGEG TIGRAAFTGN HQWIIHDPAN DHSLRSEVSA EMNHQFVAGI  120
QTIAIIPVLP RGVLQLGSTN VVVEDTNLVL QYKKLCSQLN NRSSMASSSS VKNELNQKVQ  180
SRPLNAPSSI YSADVRSNFF GGSPVTYQQC YGLDATTVSS STLANTGSNA SMLMVAQRNG  240
QAVKEHILYA PDMRFRPQNP YCDRRVESNT QSSVVSSDFI SSISASMEKH PLLMTNSRQL  300
EQGNMGEQSD RRNFLLKSLA YRNPLVHENT NMTLLHGRSQ VSDFVNSHGG FDFLPEGTRV  360
VKGNLYASTA NQILEQRCNS TSGIAGHKAA ISYKMPQSAQ VMKMESSKGG TFQASAAVSS  420
GSNLSSSLKT AISQEKHISS SDLAGPKKAN EVHDPADVIV QAVKNMDRRK LPDISNEKVP  480
SLLMDPIAES DLFDMFGSEF HHLCRNVDND LTGKAAKPES SNRGAPESSV HVDTSPAFDS  540
VDGEFPYSGI FSLTDTDQLL DAVISNVNPG GKQISGDSAS CKTSVTDIPS SSYCRSKEPK  600
HCASSGAPPL LIKNELAVSN LVKQPSFLEK EEDGCLSQNN GIHKSQIRLW IESGQNMKCE  660
SASASNSKGV DTSSKASRKR SRPGENPKPR PKDRQLIQDR IKELRELVPN GAKCSIDALL  720
EKTIKHMLFL QSVTKHADNL KDSNESKILG GENGPLKDYF EGGATWAFDV GSQSMTCPII  780
VEDLDRPRQM LVEMLCEDRG IFLEIADFIK GLGLTILRGV MEARKNKIWA RFTVEANRDV  840
TRMEIFLSLM RLLEPSCDGG GAGENPNSVK MPLGVVQYPV IPATGHLR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808394.10.0transcription factor LHW-like
TrEMBLA0A2S3H6230.0A0A2S3H623_9POAL; Uncharacterized protein
STRINGPavir.Ca00201.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.13e-51conserved peptide upstream open reading frame 7