PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C00438.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 482aa MW: 52654.9 Da PI: 7.3346

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C00438.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.9	6.9e-11	177	206	5	34
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeek 34 k rr+++NReAAr+sR+RKka+i++Le Pahal.C00438.1 177 KTIRRLAQNREAARKSRLRKKAYIQQLESS 206 6789***********************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.2E-7	172	218	No hit	No description
SMART	SM00338	8.3E-7	173	236	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.956	175	219	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.47E-7	177	212	No hit	No description
Pfam	PF00170	4.5E-8	177	210	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	180	195	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.4E-28	257	330	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MGETSSSTSH SRQDPPLPGY GFHGAIANST PPANFFDQGR GTYFGELEEA LMHQVASLKR 60 TQQAATTSRA HHGDTKPFPT AATATAATAT ARPPTLDIFP AWPMRSAHTP KEGSNLTADS 120 TDDSESSSMN NSNHSSDQLG AAANRARQFD RVSQQQIQHR NMATSSTPKT GKTLDPKTIR 180 RLAQNREAAR KSRLRKKAYI QQLESSKLKL AQMEQDMQRA RSQGLFLGGA PGANTSSGAG 240 MFDVEYARWL DEHGRRMAEL HGALHAQLPD GDLRATVDDT LTHHDELFQL KAVAAKSDVF 300 HLITGVWTTP AERCFLWMGG FRPSDLLRTL LPQLDPLTEQ QLVSICNLQQ SSQQAEEALS 360 QGLEQLHQSL ADTMAGGSLI DDANMSFMGQ MAVALGKLAN LEGFVIQADN LRQQTLHQMH 420 RILTVRQAAR CFLAIGEYHN RLRSLSSLWA SRPREILVGD EGNCGEISIA AQPSQSQFSA 480 F*

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MGETSSSTSH SRQDPPLPGY GFHGAIANST PPANFFDQGR GTYFGELEEA LMHQVASLKR  60
TQQAATTSRA HHGDTKPFPT AATATAATAT ARPPTLDIFP AWPMRSAHTP KEGSNLTADS  120
TDDSESSSMN NSNHSSDQLG AAANRARQFD RVSQQQIQHR NMATSSTPKT GKTLDPKTIR  180
RLAQNREAAR KSRLRKKAYI QQLESSKLKL AQMEQDMQRA RSQGLFLGGA PGANTSSGAG  240
MFDVEYARWL DEHGRRMAEL HGALHAQLPD GDLRATVDDT LTHHDELFQL KAVAAKSDVF  300
HLITGVWTTP AERCFLWMGG FRPSDLLRTL LPQLDPLTEQ QLVSICNLQQ SSQQAEEALS  360
QGLEQLHQSL ADTMAGGSLI DDANMSFMGQ MAVALGKLAN LEGFVIQADN LRQQTLHQMH  420
RILTVRQAAR CFLAIGEYHN RLRSLSSLWA SRPREILVGD EGNCGEISIA AQPSQSQFSA  480
F*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF111321	0.0	KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809311.1	0.0	transcription factor TGAL4-like isoform X2
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A2T7E565	0.0	A0A2T7E565_9POAL; Uncharacterized protein
STRING	Sb05g003240.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-120	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.C00438.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]