PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00199.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 346aa    MW: 37022.6 Da    PI: 8.9988
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00199.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027183205123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ Cgk ++++  L  H  +H
  Pahal.C00199.1 183 YTCKFCGKAYTSHQALGGHVAKH 205
                     9***************9999988 PP
2zf-C2H214.30.00012245267123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+k+F +   L  H+r+H
  Pahal.C00199.1 245 HQCRKCHKVFATGVALGGHMRVH 267
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.6E-4180206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.65E-7181205No hitNo description
PROSITE profilePS501579.868183210IPR007087Zinc finger, C2H2
PfamPF139124.7E-4183207IPR007087Zinc finger, C2H2
SMARTSM003550.016183205IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280185205IPR007087Zinc finger, C2H2
SuperFamilySSF576675.65E-7240267No hitNo description
PfamPF139123.5E-7244268IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.866245272IPR007087Zinc finger, C2H2
SMARTSM003550.016245267IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280247267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDYSSSSSLL PRRRLDDDDD DLEEGQFVPT AYQQSSDTDD DDAHPTHVGH YRRRRRLSLE  60
ELLALGRGDA LPSPTPSCES DGTISDGRTN PSHASVFRAE PNRFVLPLDG GWAATGSHSN  120
VSGDEYSSSF HAVVVHQPPA PPPLPYADQA AQLVHHQTAG AQQQLPRPVV VPRRAADRPQ  180
REYTCKFCGK AYTSHQALGG HVAKHKSGQR EAEAAAAGMA MPLQDGGAFL AALRRARRAE  240
APPHHQCRKC HKVFATGVAL GGHMRVHYTG PPIVPARRKN RKRGLALLAA ADIVAAPPPP  300
TGLSLALAIK KEEAPPTAPA GAGRVVRLFG IDISPKVKAP SEQQC*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684312.13e-94zinc finger protein GLI4-like
TrEMBLA0A2T7CJU20.0A0A2T7CJU2_9POAL; Uncharacterized protein
STRINGPavir.Cb02113.1.p1e-122(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18437610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.11e-11zinc finger of Arabidopsis thaliana 6