PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00165.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 321aa    MW: 34993.8 Da    PI: 7.5567
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00165.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.69.5e-22110175359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT......EEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk......vveitYegeHnhe 59 
                     Dgy+WrKYGqK+++g+ ++rsYYrCt +   gCp+k+ v+r+++ ++        +++Y geH+++
  Pahal.C00165.2 110 DGYQWRKYGQKQIEGAMYARSYYRCTRSaeqGCPAKRTVQRNHDGGDgdgtppKYTVVYMGEHTCT 175
                     9*************************988889**********964322222226899******996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-2395175IPR003657WRKY domain
SuperFamilySSF1182901.05E-20104175IPR003657WRKY domain
SMARTSM007744.6E-28108176IPR003657WRKY domain
PROSITE profilePS5081117.546110151IPR003657WRKY domain
PfamPF031066.5E-24110174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MTLLIGRQGD DELLARLREL LLPSPMTTMI KVDQSGIIIG PPASSRDGRR RRRRESKRGG  60
RDDDSKSSYN GEQQHEEPPR HSCKTSRKMK QRQKKMSSTS SLVTSVPDFD GYQWRKYGQK  120
QIEGAMYARS YYRCTRSAEQ GCPAKRTVQR NHDGGDGDGT PPKYTVVYMG EHTCTANDSM  180
EAPVILETAA AAVAPVTSTS IKRPQNHDGT APTTSAGSCS ITSTSTSTAT GIESPAISDI  240
TYWSSSSSGD YAVDDYCRLF GVHDSWAPPA TAAASSLQEM EDFTGPIRSP VHIATADGWT  300
IDHFLLQLAS NDQPVSHFSF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-13100174168OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14553RDGRRRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586200.0KU058620.1 UNVERIFIED: Panicum miliaceum WRKY3-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808247.10.0probable WRKY transcription factor 65 isoform X2
TrEMBLA0A2T8KGQ40.0A0A2T8KGQ4_9POAL; Uncharacterized protein
STRINGPavir.Ca00085.1.p3e-95(Panicum virgatum)
STRINGSi010813m7e-96(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.12e-16WRKY DNA-binding protein 67