PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.C00089.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 193aa MW: 20721.7 Da PI: 8.0571

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C00089.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.3	7.3e-45	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql+ +la Pahal.C00089.1 13 PCASCKLLRRRCTQECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQELPAQQRADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQLQMQLA 107 7********************************************************************************************** PP DUF260 96 llkee 100 l+k+e Pahal.C00089.1 108 LAKAE 112 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.738	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.3E-44	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MAGSGSSGSS SAPCASCKLL RRRCTQECVF APYFPPEDPH KFAIVHKVFG ASNVSKMLQE 60 LPAQQRADAV SSLVYEANAR MRDPVYGCVG AISYLQQQVS QLQMQLALAK AEILLCVQMQ 120 HDGHATASAS ASPPSLQRRQ QQLMESEAYG SLLMQNGLMN STGAHQQQML GSAGNTALML 180 QEACLKKESL WA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-49	6	114	4	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-49	6	114	4	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP100852	1e-119	FP100852.1 Phyllostachys edulis cDNA clone: bphyst013p01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827422.1	1e-139	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	2e-68	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2T8I6Y3	1e-138	A0A2T8I6Y3_9POAL; Uncharacterized protein
STRING	Si026864m	4e-98	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-57	LBD family protein

Link Out ? help Back to Top
Phytozome	Pahal.C00089.1

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]