PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00067.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Dof | ||||||||
Protein Properties | Length: 333aa MW: 34856.5 Da PI: 8.1539 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.7 | 1.5e-39 | 63 | 122 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprCdstntkfCyynnys++qPryfCkaCrryWt+GG+lrnvPvGgg+rknk++ Pahal.C00067.1 63 HDQALSCPRCDSTNTKFCYYNNYSTTQPRYFCKACRRYWTQGGTLRNVPVGGGCRKNKHN 122 7899******************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-27 | 61 | 121 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.6E-34 | 64 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.124 | 67 | 121 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 69 | 105 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MDMIFSNTTS NATAPSAHLQ NKQEAATVAS PAREEAVAAR NVKAKQARQQ QAAGEERKPR 60 PQHDQALSCP RCDSTNTKFC YYNNYSTTQP RYFCKACRRY WTQGGTLRNV PVGGGCRKNK 120 HNRAGGSGGS SSSAPSASSS SSSGCKKVNI TQQLMTMMPA AAAVTADFPN VLPTFMSTGG 180 GFELPSCDHH LPFAPLSLSP NPGSFLDILR VGFLDGSSSN NYGTGSNINN GMVLPFLPSP 240 FGAMQHGHGM MGDQQLVGAL QGVEEVKPMA TEHGNINCDG GLFGGGSSSG GAAQQEQQVV 300 GGDGGSSSSN NNSNRAAEYY WQGDLINNSS LI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025807789.1 | 0.0 | dof zinc finger protein PBF-like | ||||
Swissprot | O24463 | 1e-57 | PBF_MAIZE; Dof zinc finger protein PBF | ||||
TrEMBL | A0A2T7E477 | 0.0 | A0A2T7E477_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05377.1.p | 1e-160 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 1e-35 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00067.1 |
Publications ? help Back to Top | |||
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