PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B05023.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 220aa MW: 23795.9 Da PI: 10.2159

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B05023.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49	1.3e-15	172	214	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+R++a++ eLe+kv+ Le+eNk+L++ Pahal.B05023.3 172 RRQKRMIKNRESAARSRARRQAYTNELENKVARLEEENKRLRE 214 79***************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.3E-13	166	214	No hit	No description
SMART	SM00338	2.8E-6	168	217	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.369	170	214	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.13E-10	172	214	No hit	No description
Pfam	PF00170	4.4E-13	172	214	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	175	190	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MGVQTMSSHG DDGRRGLSRQ GSVYSLTLTE VETQLGEPLR SMNLDDLLRT VLPAGPATEP 60 APAAKKTVDE VWRDIQSASG ARQPTMGEMT LEDFLSRAGV TVDAGCAGPH WLHQYPPQQQ 120 YVVPRPLPLG SGAGPAVDGV GVGVFLSQVA GRKRGATAAV GGDGVVERTV ERRQKRMIKN 180 RESAARSRAR RQAYTNELEN KVARLEEENK RLRELKGRQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	151	174	RKRGATAAVGGDGVVERTVERRQK

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT033247	1e-148	BT033247.1 Zea mays full-length cDNA clone ZM_BFb0124H20 mRNA, complete cds.
GenBank	BT055475	1e-148	BT055475.1 Zea mays full-length cDNA clone ZM_BFb0325H08 mRNA, complete cds.
GenBank	KJ728208	1e-148	KJ728208.1 Zea mays clone pUT6484 bZIP transcription factor (bZIP92) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799932.1	1e-154	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Refseq	XP_025799933.1	1e-154	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Refseq	XP_025799934.1	1e-154	ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9C5Q2	4e-52	AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBL	A0A2S3H594	1e-157	A0A2S3H594_9POAL; Uncharacterized protein
STRING	Pavir.Ba00263.1.p	1e-116	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41070.3	3e-27	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.B05023.3

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription. Plant Cell Rep., 2016. 35(1): p. 155-66 [PMID:26441053] Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153]