PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B04988.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 484aa MW: 51113.1 Da PI: 6.8831

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B04988.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	102	162	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+ss Pahal.B04988.1 102 PDKILPCPRCNSMDTKFCYYNNYNIKQPRHFCKSCQRYWTAGGSMRNIPVGAGRRKSKSSS 162 7899*****************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	99	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.4E-32	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.509	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MELAGAASPR SPESHVAPPL PPPQPPEKDA CENTGDTVIT GEKPCTHQEL DLGQTNSSSL 60 NSSSECENQA PCNDEMTGSE SNLETAKTEG DVPSGEKVLK KPDKILPCPR CNSMDTKFCY 120 YNNYNIKQPR HFCKSCQRYW TAGGSMRNIP VGAGRRKSKS SSANCRSILI PGSSAATPVG 180 ESTLFPLPLP INRNQAAVNF GPDSPLCNSM ASVLKIGGEQ SNNANPASTA QPRNGETLTC 240 PPSTTTSDGP RSESHKGTVS AHQNGVVGHG NGVTSMHPIP FFPGPPFVYP WSPAWNGIPA 300 VAAPVCPAPA EAANASENGN GSSNVQWNVP PMVPVLPPGF CGPPIPVPVM PSSVWPFITP 360 WPNGAWSTPW LGPGVSASSP TSSSTCSDSG SPVLGKHSRD SRPQGDEKAE RCLWIPKTLR 420 IDDPDEAAKS SIWTTLGIEP GDRGMFRPFR SKAENREQIS STAKVLQANP AALSRSQSFQ 480 ETT*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MELAGAASPR SPESHVAPPL PPPQPPEKDA CENTGDTVIT GEKPCTHQEL DLGQTNSSSL  60
NSSSECENQA PCNDEMTGSE SNLETAKTEG DVPSGEKVLK KPDKILPCPR CNSMDTKFCY  120
YNNYNIKQPR HFCKSCQRYW TAGGSMRNIP VGAGRRKSKS SSANCRSILI PGSSAATPVG  180
ESTLFPLPLP INRNQAAVNF GPDSPLCNSM ASVLKIGGEQ SNNANPASTA QPRNGETLTC  240
PPSTTTSDGP RSESHKGTVS AHQNGVVGHG NGVTSMHPIP FFPGPPFVYP WSPAWNGIPA  300
VAAPVCPAPA EAANASENGN GSSNVQWNVP PMVPVLPPGF CGPPIPVPVM PSSVWPFITP  360
WPNGAWSTPW LGPGVSASSP TSSSTCSDSG SPVLGKHSRD SRPQGDEKAE RCLWIPKTLR  420
IDDPDEAAKS SIWTTLGIEP GDRGMFRPFR SKAENREQIS STAKVLQANP AALSRSQSFQ  480
ETT*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800855.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A2S3H583	0.0	A0A2S3H583_9POAL; Uncharacterized protein
STRING	Pavir.Bb03728.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-46	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Pahal.B04988.1