PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B04957.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 384aa MW: 41129.2 Da PI: 8.5009

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B04957.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.6	3.5e-10	167	213	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 kr++r + NR +A rs +RK +i eLe+kv++L++e ++L +l Pahal.B04957.1 167 KRAKRIIANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTL 213 9****************************************988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.1E-15	163	227	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.53	165	228	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.4E-11	167	219	No hit	No description
SuperFamily	SSF57959	9.64E-11	167	218	No hit	No description
Pfam	PF00170	6.9E-9	167	212	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.35E-22	168	217	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MAMPPKPGDP PQRSPGRSPN LNLPCPLPPV PGGAPPPPRP GGGLPAPRVG HHRRARSEVA 60 FRFPDDLGAG GGGGFDEIGS EDDLFSTFMD MDKIAGADRD RAAETSSPPR PAKHRHSASF 120 DGFGMGPAAG GTGAPQDGAG GVFGEVMEAK KAMSSEQLAE LAAIDPKRAK RIIANRQSAA 180 RSKERKARYI TELERKVQTL QTEATTLSAQ LTLFQRDTTG LSAENAELKI RLQAMEQQAQ 240 LRDALNDALK QEVERLKIAT GEMSKSNEPY NMGMQHVTYS PSFFQLSEQH AVQHHGNIQL 300 PPHFQQPPPN VPSHQMLSHP NSLSDMMQQD SLGRLQGLDI GKGSVAVKSE AEVVVKSEGS 360 SISAARGGLA KRWQREELGL QST*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MAMPPKPGDP PQRSPGRSPN LNLPCPLPPV PGGAPPPPRP GGGLPAPRVG HHRRARSEVA  60
FRFPDDLGAG GGGGFDEIGS EDDLFSTFMD MDKIAGADRD RAAETSSPPR PAKHRHSASF  120
DGFGMGPAAG GTGAPQDGAG GVFGEVMEAK KAMSSEQLAE LAAIDPKRAK RIIANRQSAA  180
RSKERKARYI TELERKVQTL QTEATTLSAQ LTLFQRDTTG LSAENAELKI RLQAMEQQAQ  240
LRDALNDALK QEVERLKIAT GEMSKSNEPY NMGMQHVTYS PSFFQLSEQH AVQHHGNIQL  300
PPHFQQPPPN VPSHQMLSHP NSLSDMMQQD SLGRLQGLDI GKGSVAVKSE AEVVVKSEGS  360
SISAARGGLA KRWQREELGL QST*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:14704272}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU964870	0.0	EU964870.1 Zea mays clone 282242 transcription factor RF2b mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025799971.1	0.0	transcription factor RF2b-like
Swissprot	Q6S4P4	1e-144	RF2B_ORYSJ; Transcription factor RF2b
TrEMBL	A0A2S3H524	0.0	A0A2S3H524_9POAL; Uncharacterized protein
STRING	Pavir.Bb03755.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2683	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	3e-71	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.B04957.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064]