PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B04739.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NF-YA | ||||||||
Protein Properties | Length: 293aa MW: 31883.2 Da PI: 9.7888 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 107.5 | 1.1e-33 | 153 | 209 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rakle+++kl k+rkpylheSRh+hA++R+RgsgGrF Pahal.B04739.6 153 EEPIYVNAKQYHAILRRRQTRAKLEAQNKL-VKGRKPYLHESRHRHAMKRARGSGGRF 209 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.5E-38 | 151 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.992 | 152 | 212 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.5E-28 | 154 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.3E-25 | 155 | 177 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 157 | 177 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.3E-25 | 186 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MPKLLREVED HPVHPMSKSN HGFFSGNGHE KKHLGHKIHD RDSSSESGQS HQEAPAVSES 60 SLNENTSTQS DNDEGHGKHN QDTVHSVLSM GKQGSAFLPP KLDYNPSFAC LPYPADAYYG 120 GVLTGYPPHA VVHPQQNHTT NAPVMLPVEP AEEEPIYVNA KQYHAILRRR QTRAKLEAQN 180 KLVKGRKPYL HESRHRHAMK RARGSGGRFL NTKQLQEQNQ QHQASGGSSS SKVIGNSISS 240 QGDPTPTPST PASSDTARAS RANQDRTCFP SVGFRPAMNF SEPGGGGAKL VR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-23 | 153 | 214 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 193 | 202 | RHRHAMKRAR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800585.1 | 0.0 | nuclear transcription factor Y subunit A-4-like isoform X1 | ||||
Refseq | XP_025800586.1 | 0.0 | nuclear transcription factor Y subunit A-4-like isoform X1 | ||||
Refseq | XP_025800587.1 | 0.0 | nuclear transcription factor Y subunit A-4-like isoform X1 | ||||
Refseq | XP_025800588.1 | 0.0 | nuclear transcription factor Y subunit A-4-like isoform X1 | ||||
TrEMBL | A0A2S3H3P4 | 0.0 | A0A2S3H3P4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00442.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 3e-40 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B04739.6 |