PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04600.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 677aa    MW: 74417.9 Da    PI: 4.7165
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-133579348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +W++eEd  l   ++ +G+++W+ Ia+ +   +t+ qc+ rw++yl
   Pahal.B04600.1 35 SWSAEEDSVLRAQIAHHGTDNWTIIAAQFK-DKTARQCRRRWYNYL 79
                     6****************************9.**************7 PP
2Myb_DNA-binding41.72.7e-1385128146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g W+ eEd ll +a k+lG++ W+ Ia+ +  gRt++ +k+r+ +
   Pahal.B04600.1  85 KGGWSREEDMLLCEAQKLLGNR-WTEIAKVVS-GRTDNAVKNRFST 128
                      688*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.6972883IPR017930Myb domain
SMARTSM007173.2E-123281IPR001005SANT/Myb domain
SuperFamilySSF466893.67E-2634126IPR009057Homeodomain-like
CDDcd001671.55E-123579No hitNo description
PfamPF139214.3E-153696No hitNo description
Gene3DG3DSA:1.10.10.604.2E-193686IPR009057Homeodomain-like
SMARTSM007174.7E-1484132IPR001005SANT/Myb domain
PROSITE profilePS5129417.03984134IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.9E-1987133IPR009057Homeodomain-like
CDDcd001674.20E-1088129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009553Biological Processembryo sac development
GO:0010052Biological Processguard cell differentiation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MATGPDLSSS SGAAAAAVPD AAPGASAKKD RTIVSWSAEE DSVLRAQIAH HGTDNWTIIA  60
AQFKDKTARQ CRRRWYNYLN SECKKGGWSR EEDMLLCEAQ KLLGNRWTEI AKVVSGRTDN  120
AVKNRFSTLC KRRAKDDEPF QENGTPCSNT NAKRVLTKTG CVTPGAAGSS LPMKQISSDL  180
KENIVPNMIL FGQEKGTQQD ARQPLANISS NNQQNLNTVK SQNLVATTTK TLLGPEQHCV  240
KQEGNFMKKD DPKVAILLQQ ADLLCSLATK INHEDTSQSM DEAWQQLQHH LVKKEDNGMS  300
ENSGSGIASL LEELDDLIVD PYESKEEDEE KLREQNGQRQ TDVENMQCSD PSQASMEVTS  360
NMAPDEMMED HTVGNCKEVS SLCRYMLSGS MEPCSGAKIT ASENLSEVAE DRRLQQVEST  420
SPVLTDFDDF IIDPYENKEE DEQNLRELNG QIDVHDHQSY CPSQATMEDN NLCRNVLSGS  480
MEPSPGAEKA ASENLSEVAE KRRFQCMEST SPVPTNFQTK EYGETPVPEN LNEVAEDSRL  540
QRVEFTSPAH TLLRAKAGAE TFASPRIAVV AKDSKLPSME FSSPADTVIR AKAGAETYAS  600
PRIAVVAKDS KLPSMEFTSP AHTVATFQPY ADDMPTPKFT ASERNFLLSV LELTSPGLRP  660
ETSQQPSCKR ALLNSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-293613310107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0634261e-114AK063426.1 Oryza sativa Japonica Group cDNA clone:001-115-D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799285.10.0transcription factor MYB124 isoform X2
TrEMBLA0A2S3H4I60.0A0A2S3H4I6_9POAL; Uncharacterized protein
STRINGPavir.Bb03405.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14350.23e-84MYB family protein