PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B04546.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 23634.2 Da PI: 8.2651 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 92.9 | 3.7e-29 | 21 | 122 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ Cvl+p++ +++q +++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA r+ +Pv+Gavg++ +++++l+q+ Pahal.B04546.1 21 SCNGCRVLRKGCSEACVLRPCLqwiegAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVSGAVGLLGAGSWHLCQA 115 6*********************9999888899*************************************************************** PP DUF260 91 kaelall 97 ++e++l+ Pahal.B04546.1 116 AVETVLR 122 *998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.721 | 20 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-25 | 21 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006807 | Biological Process | nitrogen compound metabolic process | ||||
GO:0060776 | Biological Process | simple leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MRGGPPGCGR VAAAVVVPAM SCNGCRVLRK GCSEACVLRP CLQWIEGAEA QGHATVFVAK 60 FFGRAGLMSF LTAVPEPQRP AVFQSLLYEA AGRTINPVSG AVGLLGAGSW HLCQAAVETV 120 LRGGGIRPLP ELDGGLPAAD GRDPLALTAR RAVAGCSTFS AAKRAAARAN AGAPVAAYAF 180 PEPSCDLGLC LSPGSPPAPG ERRPGTPSLT SEESVTTTSG GGGREPELLN LFV* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC243238 | 0.0 | AC243238.1 Panicum virgatum clone PV_ABa020-K10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802506.1 | 1e-163 | LOB domain-containing protein 37-like | ||||
Swissprot | Q9FN11 | 1e-67 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
Swissprot | Q9SN23 | 1e-67 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2S3H3R5 | 1e-162 | A0A2S3H3R5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba01055.1.p | 1e-133 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 3e-66 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B04546.1 |
Publications ? help Back to Top | |||
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