PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B04523.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HRT-like

Protein Properties

Length: 574aa MW: 62845.1 Da PI: 9.2541

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B04523.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55.5	9.3e-18	309	338	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv ledGs C ++Pv+gRKRC HKG+R+ Pahal.B04523.1 309 CGVVLEDGSSCLEHPVEGRKRCSLHKGRRV 338 *****************************7 PP
2	HRT-like	50.8	2.7e-16	535	564	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG+++ dGs+C ++Pv+gRKRC+ HKG+R Pahal.B04523.1 535 TCGARTPDGSPCINKPVEGRKRCALHKGQR 564 7****************************9 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence Send to blast
MPASPAPVTA RLKREDCHRT KHDPLFSPWK VLVGPSDWED HSAGKDGVQR YRIRNLPDNF 60 PGLYELGVAG ASDEGVRARR RDSRGVVVVY LGQADSVRAR LQQYGRSGSH LDTGNSLGSA 120 GKDELNVVAP GLGLFREVFF RGYSIVFRCA LMDNKQEAEK TEAQLLRVFD YAWNKLQNGA 180 CRREEILLKL EQGAASHRSS LLSRVRHMKQ DIFGVKAGIK IKGSGSVNTL PGIMKSMLPR 240 VRTFIGFRPH LVNSDDSGGE AIDIPSKKIS GIPCGNRQAC RRRSEGYKVK KIDVAKRRTV 300 PIQDSNSFCG VVLEDGSSCL EHPVEGRKRC SLHKGRRVKG SPKSSSTSYP CQAEIPIPRL 360 IEALDNSDRT QEVIESIPHL TEDLDNSDRT QESEILPKNI SITVEESLRQ SNSIKVEEVK 420 TREAPTEDGT HDASQDACIC EEKASHAEPE SQEPQPSGRM WFDLLKAQKK STSTHAARGS 480 GSQTRIRDRA TPICGAVANN GSCKMVPIAG RKICEKDSGI EVGASFSRSS GWPCTCGART 540 PDGSPCINKP VEGRKRCALH KGQRASCSLT PLV*

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence Send to blast

MPASPAPVTA RLKREDCHRT KHDPLFSPWK VLVGPSDWED HSAGKDGVQR YRIRNLPDNF  60
PGLYELGVAG ASDEGVRARR RDSRGVVVVY LGQADSVRAR LQQYGRSGSH LDTGNSLGSA  120
GKDELNVVAP GLGLFREVFF RGYSIVFRCA LMDNKQEAEK TEAQLLRVFD YAWNKLQNGA  180
CRREEILLKL EQGAASHRSS LLSRVRHMKQ DIFGVKAGIK IKGSGSVNTL PGIMKSMLPR  240
VRTFIGFRPH LVNSDDSGGE AIDIPSKKIS GIPCGNRQAC RRRSEGYKVK KIDVAKRRTV  300
PIQDSNSFCG VVLEDGSSCL EHPVEGRKRC SLHKGRRVKG SPKSSSTSYP CQAEIPIPRL  360
IEALDNSDRT QEVIESIPHL TEDLDNSDRT QESEILPKNI SITVEESLRQ SNSIKVEEVK  420
TREAPTEDGT HDASQDACIC EEKASHAEPE SQEPQPSGRM WFDLLKAQKK STSTHAARGS  480
GSQTRIRDRA TPICGAVANN GSCKMVPIAG RKICEKDSGI EVGASFSRSS GWPCTCGART  540
PDGSPCINKP VEGRKRCALH KGQRASCSLT PLV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802669.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A2S3H433	0.0	A0A2S3H433_9POAL; Uncharacterized protein
STRING	Pavir.Ba01074.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7948	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	4e-64	effector of transcription2

Link Out ? help Back to Top
Phytozome	Pahal.B04523.1