PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04482.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 783aa    MW: 85812.6 Da    PI: 7.3261
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04482.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056385123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ Cgk F r  nL+ H r H
  Pahal.B04482.1 63 FVCEVCGKGFQRDQNLQLHRRGH 85
                    89******************988 PP
2zf-C2H215.64.7e-05142163223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      Cp Cgk++  + +Lk H +t+
  Pahal.B04482.1 142 ACPRCGKRYAVQADLKAHAKTC 163
                     6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-86285No hitNo description
SMARTSM003550.0146385IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-56385IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6356385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
SMARTSM0035585106136IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-5129162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-8136161No hitNo description
SMARTSM0035590141161IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663141169IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 783 aa     Download sequence    Send to blast
MTPHPTEPEA GPEQAAPAPE AALPLAAAAP APVKKKRNLP GTPDPDAEVI ALSPGTLLAT  60
NRFVCEVCGK GFQRDQNLQL HRRGHNLPWR LRQRGPGAAP PRRRVYVCPE PGCVHHSPAR  120
ALGDLTGIKK HFCRKHGEKR WACPRCGKRY AVQADLKAHA KTCGTREYRC DCGTLFTRRD  180
SFVTHRAFCG ALVEETGRVL APPSPRPPDL EAEEDVDKDK EKGREEEENE DSAVAAEQPQ  240
RVEAPMPEAP QRIPLPPPLP QEPLRRPSPP PLPKEPLCRP SPPPLPKELL RRPSPPPLPK  300
EPPRRPSPPP LPKELPRRPT PPPLPKEPQL FPSPLPFPLE QRPVVAVVPN VDDPEVVAET  360
AVAAKLEDEA DQDEDTCFQE ADQYKEAELE VSNLMDKDTP MLPCFLPSPS EAIGTDGSST  420
TCGAGGSVSN SIAPSTTTNT FAGLFASATT STTSQSRSLR DLIGVDPTFL CLAIGAPSSL  480
FPQTSPSNPG TFAAPPAPHM SATALLQKAA EVGASQSSSS FLKEFGLASS STSSPPSKQP  540
PHGRFTENSA LPWHHRSNQH MEMERHRNHQ HREMESSSQP WHHRSTQQME MEHHRNNQQR  600
EMESSSQRWH HHRSDQQMGM ERLRSNQQMQ MESSTHRWPH HRSNQQMEVS NQQMQMESST  660
QRWAHHRSSQ EMEVMERHHR SGRQMERESR AMLSGGLGLG LAYESGNSGL PDLMMGPSPL  720
FGPKPATLDF LGLGIGGTMG GSTANGGLPA LMVGGELDMG PSAQVPAPWE DAKRKTNGRT  780
IL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-29137199365Zinc finger protein JACKDAW
5b3h_F1e-29137199365Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663580.0BT066358.1 Zea mays full-length cDNA clone ZM_BFc0009B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802400.10.0protein indeterminate-domain 1-like
TrEMBLA0A2S3H3K30.0A0A2S3H3K3_9POAL; Uncharacterized protein
STRINGPavir.J25784.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.12e-90C2H2 family protein