PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04440.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 310aa    MW: 33183.8 Da    PI: 7.0198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24e-184898155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aaka+++a++ l+g
  Pahal.B04440.1 48 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 98
                    79********.7*********32...35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-1648106No hitNo description
SuperFamilySSF541714.9E-1948107IPR016177DNA-binding domain
PfamPF008473.3E-124898IPR001471AP2/ERF domain
PROSITE profilePS5103219.92849106IPR001471AP2/ERF domain
SMARTSM003804.7E-3449112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-2849106IPR001471AP2/ERF domain
PRINTSPR003676.0E-75061IPR001471AP2/ERF domain
PRINTSPR003676.0E-77288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MELNFQSQPS VFQLEDYSSY YYYYQQEAAA QAKPSKPRGR KKGSNNHSKF VGVRQRPSGR  60
WVAEIKDTTQ KIRMWLGTFE TAEAAAKAYD EAARLLRGNE ARTNFAPRIS PDCPLAVRIR  120
GLLHHKKIKK AKAAAARSSS AAASKQKAAS SPSPTTSNSN SNSHSTNSAC GGPSSSSSSS  180
SSSSAVSCDD AMAILNGSGG ALDAGEVYRP EVAPVGAEEF DSWMFESAFG QFPPLDSFAA  240
VESAVPAAPA EEEPAAAAAP GEMAEFERIK VERRISASLY AMNGLQEYFD RVFDASACDP  300
LWDLSPLCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-13471051271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276610.0KJ727661.1 Zea mays clone pUT5588 AP2-EREBP transcription factor (EREB62) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803611.10.0ethylene-responsive transcription factor RAP2-11
TrEMBLA0A2S3H3K80.0A0A2S3H3K8_9POAL; Uncharacterized protein
TrEMBLA0A2T7EXR90.0A0A2T7EXR9_9POAL; Uncharacterized protein
STRINGSi030686m1e-145(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-26related to AP2 11