PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04360.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 453aa    MW: 48755.6 Da    PI: 6.9618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.95.4e-112674362374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeav+ ++l++a++lL ++ elasp g++ +R+aayf  AL ar+++s  + y+ l+ ++ +  +s +++ a+++++ +sP++kfsh+
  Pahal.B04360.1  67 LSLLLRCAEAVAMDQLTEARELLPEIAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLALRPLAAAQSRRVAGAFQAYNALSPLVKFSHF 161
                     689******************************************************************************************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl......vakr 185
                     taNqaIl+a++ge+r+H+iD+di+qGlQWp L++ LasRp++p slRiTg+g+    s + le+tg+rLa+fA++lg+pfef+++      va++
  Pahal.B04360.1 162 TANQAILQALDGEDRLHVIDLDIMQGLQWPGLFHILASRPRKPRSLRITGLGA----SLDVLEATGRRLADFAASLGLPFEFHPIegkighVADA 252
                     *****************************************************....9**************************98887766777 PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak...lpr 277
                      + l +++ + +++Ea++V++++  h l+d ++s       +++l+++l+Pk++++veq++ h s++Fl rf+eal+yysalfd+l  +   +++
  Pahal.B04360.1 253 AALLGPRHRQQQQDEATVVHWMH--HCLYDVTGSDLG----TVRLLRRLRPKLITIVEQDLGH-SGDFLGRFVEALHYYSALFDALGDGagaAAA 340
                     7777888888888*********9..888888888888....9*********************.899*******************554233556 PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                     es+er+ vEr+llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+l  + a+qa+lll +++++gy++ ee+++l lgWkd +L+++Sa
  Pahal.B04360.1 341 ESDERHAVERQLLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVSLAGSPATQARLLLGMYPWKGYTLVEEEACLKLGWKDLSLLTASA 434
                     67*************************998887.9************************************************************ PP

            GRAS 373 Wr 374
                     W+
  Pahal.B04360.1 435 WE 436
                     *5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.63840416IPR005202Transcription factor GRAS
PfamPF035141.9E-10967436IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MLQGVLSRAP ATESPAAAAM KAKRAPASPD EEEEGEGRPA RGKRQQLLGL GSAAAAEGPE  60
TRGLRLLSLL LRCAEAVAMD QLTEARELLP EIAELASPFG SSPERVAAYF GDALCARVLS  120
SYLGAYSPLA LRPLAAAQSR RVAGAFQAYN ALSPLVKFSH FTANQAILQA LDGEDRLHVI  180
DLDIMQGLQW PGLFHILASR PRKPRSLRIT GLGASLDVLE ATGRRLADFA ASLGLPFEFH  240
PIEGKIGHVA DAAALLGPRH RQQQQDEATV VHWMHHCLYD VTGSDLGTVR LLRRLRPKLI  300
TIVEQDLGHS GDFLGRFVEA LHYYSALFDA LGDGAGAAAA ESDERHAVER QLLGAEIRNI  360
VAVGGPKRTG EVRVERWGDE LRRAGFRPVS LAGSPATQAR LLLGMYPWKG YTLVEEEACL  420
KLGWKDLSLL TASAWEPTDA AAATPRRGSQ ET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1577243724379Protein SCARECROW
5b3h_D1e-1577243724379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269610.0KJ726961.1 Zea mays clone pUT3661 GRAS transcription factor (GRAS54) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801132.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-174SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2S3H3E20.0A0A2S3H3E2_9POAL; Uncharacterized protein
STRINGSi032551m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-161GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]