PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B04352.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 420aa MW: 44126.3 Da PI: 8.7173

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B04352.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.2	1.5e-53	33	161	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++ Pahal.B04352.1 33 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPDKATFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILAS 126 79**************************.88***********8888899**********************************99 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl Pahal.B04352.1 127 ngSREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 161 777788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-63	30	200	IPR003441	NAC domain
PROSITE profile	PS51005	61.493	33	200	IPR003441	NAC domain
Pfam	PF02365	6.0E-28	34	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MRSMESTDSS SGSAPPRRQQ QQQPKQPGSA PDLPPGFRFH PTDEELVVHY LKKKAASAPL 60 PVAIIAEVDL YKFDPWELPD KATFGEHEWY FFSPRDRKYP NGARPNRAAT SGYWKATGTD 120 KPILASNGSR EKVGVKKALV FYRGKPPKGL KTNWIMHEYR LADAAGSTTA HRPPPGAGGG 180 GGKATSLRLD DWVLCRIYKK TNKLGVGDHQ RSLECEDSVE DAVVAAYHTH AAPAVAAAGG 240 GGAHGGNYTS LLHHHSGHED HFLDGLLTAE DAGGLSAGAS SLSHLAAAAR AAPSATKQLL 300 VPSSTPFNWL DASALAILPP TKRFHGYSGR DTTTDGGMSL SSPSERNHLA AVGAGAVDNG 360 ASGGASAIPT FLNPLGVQAA ATYHHHAILG TPVPPEAAAA AAACTFQHPY QLSGVNWNP*

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MRSMESTDSS SGSAPPRRQQ QQQPKQPGSA PDLPPGFRFH PTDEELVVHY LKKKAASAPL  60
PVAIIAEVDL YKFDPWELPD KATFGEHEWY FFSPRDRKYP NGARPNRAAT SGYWKATGTD  120
KPILASNGSR EKVGVKKALV FYRGKPPKGL KTNWIMHEYR LADAAGSTTA HRPPPGAGGG  180
GGKATSLRLD DWVLCRIYKK TNKLGVGDHQ RSLECEDSVE DAVVAAYHTH AAPAVAAAGG  240
GGAHGGNYTS LLHHHSGHED HFLDGLLTAE DAGGLSAGAS SLSHLAAAAR AAPSATKQLL  300
VPSSTPFNWL DASALAILPP TKRFHGYSGR DTTTDGGMSL SSPSERNHLA AVGAGAVDNG  360
ASGGASAIPT FLNPLGVQAA ATYHHHAILG TPVPPEAAAA AAACTFQHPY QLSGVNWNP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-72	23	200	10	168	NAC domain-containing protein 19
3swm_B	1e-72	23	200	10	168	NAC domain-containing protein 19
3swm_C	1e-72	23	200	10	168	NAC domain-containing protein 19
3swm_D	1e-72	23	200	10	168	NAC domain-containing protein 19
3swp_A	1e-72	23	200	10	168	NAC domain-containing protein 19
3swp_B	1e-72	23	200	10	168	NAC domain-containing protein 19
3swp_C	1e-72	23	200	10	168	NAC domain-containing protein 19
3swp_D	1e-72	23	200	10	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269\|PubMed:17124321}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802635.1	0.0	NAC transcription factor NAM-B2-like
Swissprot	A0SPJ9	0.0	NAM2_HORVV; NAC transcription factor NAM-2
TrEMBL	A0A2S3H3E5	0.0	A0A2S3H3E5_9POAL; Uncharacterized protein
STRING	Pavir.J08552.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7572	36	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-89	NAC domain containing protein 25

Link Out ? help Back to Top
Phytozome	Pahal.B04352.1

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321]