PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04056.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 343aa    MW: 33770.6 Da    PI: 8.0501
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04056.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.95.3e-393493362
          zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     +al+cprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+s+
  Pahal.B04056.1 34 AEALRCPRCDSANTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRSR 93
                    57899****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.6E-333691IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3853791IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-273791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAGAGGATAG APPAGARSSA GAGAAGAPVA DPRAEALRCP RCDSANTKFC YYNNYSLSQP  60
RHFCKACKRY WTRGGTLRNV PVGGGCRKNK RSRSSSAAGA GGRTGSSAAA AAAAVTSSSA  120
ASTLSLPPPA GSLPSLTSAL GLPGGTSLAS LLLGSGTGGD HLGLFQAAMQ SVVSSEATAY  180
EMQQQQTQVD HLLGLGYGGA GAQIQQLKPW MQEAGAGAGG IMDSFYAPLL SSSLVPGLEE  240
LHVKAEAAGA GDHQQKAAPG DQQSGSWELP TPSSSNVDAN IIATDALMAA AASMNPAVSS  300
TSTAATTTAP SSFMYWGNGG IGGAAAAWPD LANCGSSIAT LF*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824030.0KC582403.1 Sorghum bicolor dof6 protein (dof6) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803596.10.0dof zinc finger protein 2-like
TrEMBLA0A2S3H2K50.0A0A2S3H2K5_9POAL; Uncharacterized protein
STRINGSb02g034320.11e-148(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88953041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.13e-33TARGET OF MONOPTEROS 6