PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03785.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 398aa    MW: 45133.7 Da    PI: 7.027
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03785.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.41.2e-11165211147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ WT+eE+  ++++v+ lG g Wk I+ ++   Rt+ q+ s+ qky
   Pahal.B03785.1 165 KQCWTAEEHRDFLRGVNCLGRGAWKFISDYFVPSRTPAQLASHAQKY 211
                      689*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717263992IPR001005SANT/Myb domain
PROSITE profilePS500903.9264390IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.7E-10157214IPR009057Homeodomain-like
PROSITE profilePS5129415.262160216IPR017930Myb domain
SuperFamilySSF466893.73E-15161217IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-13163214IPR006447Myb domain, plants
SMARTSM007173.8E-7164214IPR001005SANT/Myb domain
PfamPF002498.4E-9165211IPR001005SANT/Myb domain
CDDcd001673.63E-6168212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGAAGRRWCR EAERARRARI ASGVSFRGKD FFEVMDPKAT QEWTSCEEEE FKVHFAELWY  60
EKSCDRMEAL AKRFPAKSIQ QLRDKYAEVF ADMLCGETDG EPSRDDATND WDDWYKLLEG  120
ETHDLVMDPL VETPLFEPSK QLLFEPAGDQ EEIQKSHCKS SRKRKQCWTA EEHRDFLRGV  180
NCLGRGAWKF ISDYFVPSRT PAQLASHAQK YFDRIDKNEL DDTRQRHSIN DVRLVNHGMN  240
ISAHSYTEPG KGKGIASSIL PTILTEDIGI LHGLAQGMPE FGQASNSPSN LAGQMTHNNH  300
ILESFQLEVS GIPSPREQGS VLLDQTRAEN RAYPSRKRNI GAATNRRREK KRMLPDLLTA  360
QTPHVLQLGQ GSNGAANLSY EIVPIKRHNL HQNVPPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165SRKRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804405.10.0transcription factor DIVARICATA-like
TrEMBLA0A2T8KRI80.0A0A2T8KRI8_9POAL; Uncharacterized protein
STRINGPavir.Bb02561.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1975668
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-21MYB family protein