PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03775.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 512aa    MW: 52581.4 Da    PI: 9.4919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03775.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-057092123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k F r  nL+ H r H
  Pahal.B03775.1 70 FVCEVCNKGFQREQNLQLHRRGH 92
                    89*******************88 PP
2zf-C2H213.30.00025146168123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  Pahal.B03775.1 146 WKCDKCNKRYAVQSDWKAHSKTC 168
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.9E-66992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.06E-76992No hitNo description
PfamPF121713.2E-57092IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00417092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0947092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355300111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-5134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.06E-7141166No hitNo description
SMARTSM00355110146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MAAASSAPFF GLGDTQMQPQ GPSLQQNSAA AAPGAAAAPP KKKRNQPGNP NPDAEVIALS  60
PRTLLATNRF VCEVCNKGFQ REQNLQLHRR GHNLPWKLKQ KNPKEARRRV YLCPEPTCVH  120
HDPSRALGDL TGIKKHYCRK HGEKKWKCDK CNKRYAVQSD WKAHSKTCGT REYRCDCGTL  180
FSRRDSFITH RAFCDALARE SAQMPPLGAG LYVGTGSMSL GLSGGAAQMH GFADQAGQSS  240
SAAAAAQFDH IMPPSSGPSL FRSQASASSS SFFLGGGAPT PAQDFSNDPQ GGQGSSLLHS  300
KSSFQGLMQL PEQQHQSGSS NANGNNLLNL GFFSGNGGGG SAGGQDARLV VQDQFNGSGG  360
GGGNADHGSV MASMGSHLSC SSFPYSSPSA GLAQNSATAL LMKAAQMGST SSAQNGPSAL  420
LRAAGFSSAS GQGASRAAGE GTSSHEAHFH DLIMNSLAGG GGGGGGGFSS GAGFGAVDDG  480
KLSTRDFLGV GRGSMAPPGL HIGALDPAQM K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33142207368Zinc finger protein JACKDAW
5b3h_F2e-33142207368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548650.0AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801108.10.0protein indeterminate-domain 4, chloroplastic-like
SwissprotQ8GYC11e-124IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A2S3H2550.0A0A2S3H255_9POAL; Uncharacterized protein
STRINGPavir.Ba01478.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-109indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]