PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B03774.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 236aa MW: 25599.9 Da PI: 8.3638 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 8.7e-05 | 6 | 28 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k r nL+ H+r H Pahal.B03774.1 6 FVCEVCHKGLQREQNLQLHQRGH 28 89*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 4 | 28 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.58E-5 | 4 | 28 | No hit | No description |
PROSITE profile | PS50157 | 9.702 | 6 | 28 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 8 | 28 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MATKPFVCEV CHKGLQREQN LQLHQRGHNL PWKLKQKDPK EARRRVYLCP EPTCVHHNPS 60 RALGDLTGIK KHYCPSTTLK CGKCDKLYAV EADWKAHSQT CGTREYRCDC GELFSRSVQF 120 LRPFPKDTFA AHRSFCNMAP RRESAEVTPV EADLNVSSGS ISLGLSGVAT QIHGLADQAG 180 QSSLAAAAAA VQFDHIMPSS SSGPSMLRSQ APSSSSFLLG GKAPSPAQDF SEDGD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-18 | 79 | 150 | 7 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 4e-18 | 79 | 150 | 7 | 68 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY754865 | 1e-111 | AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957598.1 | 1e-104 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_004957599.1 | 1e-104 | protein indeterminate-domain 5, chloroplastic | ||||
Refseq | XP_004957600.1 | 1e-104 | protein indeterminate-domain 5, chloroplastic | ||||
Swissprot | Q9ZUL3 | 1e-64 | IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic | ||||
TrEMBL | A0A3L6QQP5 | 1e-110 | A0A3L6QQP5_PANMI; Protein indeterminate-domain 5, chloroplastic-like | ||||
STRING | Si029540m | 1e-103 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02080.2 | 7e-66 | indeterminate(ID)-domain 4 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B03774.1 |
Publications ? help Back to Top | |||
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