PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B03741.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 852aa MW: 93390.8 Da PI: 6.8088

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B03741.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.4	6.9e-29	534	585	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++ Pahal.B03741.2 534 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 585 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.734	524	605	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-25	537	585	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-22	743	840	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.4E-25	750	834	No hit	No description
PROSITE profile	PS51745	21.918	753	836	IPR000270	PB1 domain
SMART	SM00666	5.9E-19	753	836	IPR000270	PB1 domain
Pfam	PF00564	3.1E-15	754	834	IPR000270	PB1 domain
CDD	cd06407	1.19E-41	754	834	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 852 aa Download sequence Send to blast
MEGGGGDPQP SVSLQARTPS EGGAAVDLDL LEQLLSGDNG WFEVVSRSPN SLVSPPPAAF 60 FSADVTATAA AATTQAASSW WIQTGGGASP SSVRERFSQA LSYIRETQSD GDVLVQLWVP 120 VNRGDGQLVL TTSGQPFTLD QRSDSLIRFR EVSTKYQFSA DVKSGDSPGL PGRVFIGRLP 180 EWSPDIRYFT SYEYPRVRDA QYLDIHGTMG LPVFEKESYN CLGVIELIMT RQKLNFTSEL 240 NTICSALQAV NLRSTEVSSV PRMQFSTASY KDALPEILEV LRAACLTHKL PLAQTWVTCA 300 QQGKRGSRHS DENYRYCIST IDEACFVNEP KMQDFHDACS EHHLLRGQGV AGKAFTTNQP 360 CFLPDIGSST KLEYPLSHHA KIFDLKGAVA IRLRCTRTGT ADFVLEFFLP TDCEALEEQK 420 VVLDSLSGTM RSVCQTLRVV TDKEMEDEAI WEMNELNSFT PQGKNKVEEL SFGGSSADRR 480 GEASWTSLAE TSQQESELAA MQMHGMFSSG GQGPSLSGVQ ATAEGSKAKR RTKAEKTVSL 540 QVLRQYFAGS LKDAARSLGV CPTTLKRICR QHGITRWPSR KIKKVDHSLR KLQQIIDSVH 600 GAETSFQLNT LYKDLTNTSI SSENNLSGSN TVPPTNQSNL TNFDKHRHHK SNSIVPSTSH 660 SHSSCSHNSD SSPSCSGGAT KHAPQGIIDL MKSGNPVKDS PIQTLQTENT SLYEHFSVNE 720 APTNLLQDVT EKANGGLHSK RSPSSPKHNA EANMRVKATF GSEKVRFRLN PECNFQELKY 780 EIAKRLSIVD TSSLILKYLD DDSEWVLMTC DADLQECLHV YKLADIQTIK ISVHLAVSPA 840 ARVTTGHTGL S*

Sequence ? help Back to Top

Protein Sequence Length: 852 aa Download sequence Send to blast

MEGGGGDPQP SVSLQARTPS EGGAAVDLDL LEQLLSGDNG WFEVVSRSPN SLVSPPPAAF  60
FSADVTATAA AATTQAASSW WIQTGGGASP SSVRERFSQA LSYIRETQSD GDVLVQLWVP  120
VNRGDGQLVL TTSGQPFTLD QRSDSLIRFR EVSTKYQFSA DVKSGDSPGL PGRVFIGRLP  180
EWSPDIRYFT SYEYPRVRDA QYLDIHGTMG LPVFEKESYN CLGVIELIMT RQKLNFTSEL  240
NTICSALQAV NLRSTEVSSV PRMQFSTASY KDALPEILEV LRAACLTHKL PLAQTWVTCA  300
QQGKRGSRHS DENYRYCIST IDEACFVNEP KMQDFHDACS EHHLLRGQGV AGKAFTTNQP  360
CFLPDIGSST KLEYPLSHHA KIFDLKGAVA IRLRCTRTGT ADFVLEFFLP TDCEALEEQK  420
VVLDSLSGTM RSVCQTLRVV TDKEMEDEAI WEMNELNSFT PQGKNKVEEL SFGGSSADRR  480
GEASWTSLAE TSQQESELAA MQMHGMFSSG GQGPSLSGVQ ATAEGSKAKR RTKAEKTVSL  540
QVLRQYFAGS LKDAARSLGV CPTTLKRICR QHGITRWPSR KIKKVDHSLR KLQQIIDSVH  600
GAETSFQLNT LYKDLTNTSI SSENNLSGSN TVPPTNQSNL TNFDKHRHHK SNSIVPSTSH  660
SHSSCSHNSD SSPSCSGGAT KHAPQGIIDL MKSGNPVKDS PIQTLQTENT SLYEHFSVNE  720
APTNLLQDVT EKANGGLHSK RSPSSPKHNA EANMRVKATF GSEKVRFRLN PECNFQELKY  780
EIAKRLSIVD TSSLILKYLD DDSEWVLMTC DADLQECLHV YKLADIQTIK ISVHLAVSPA  840
ARVTTGHTGL S*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800526.1	0.0	protein NLP1-like isoform X1
TrEMBL	A0A2S3H1U8	0.0	A0A2S3H1U8_9POAL; Uncharacterized protein
STRING	Pavir.Bb02544.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.B03741.2