PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B03741.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 877aa MW: 96092.8 Da PI: 6.7367

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B03741.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.3	7.2e-29	559	610	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++ Pahal.B03741.1 559 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 610 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.734	549	630	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-25	562	610	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.23E-22	768	865	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.5E-25	775	859	No hit	No description
SMART	SM00666	5.9E-19	778	861	IPR000270	PB1 domain
PROSITE profile	PS51745	21.918	778	861	IPR000270	PB1 domain
CDD	cd06407	1.21E-41	779	859	No hit	No description
Pfam	PF00564	3.2E-15	779	859	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MCMEAWSFAS RSPAGEKSNP ESLTCMEGGG GDPQPSVSLQ ARTPSEGGAA VDLDLLEQLL 60 SGDNGWFEVV SRSPNSLVSP PPAAFFSADV TATAAAATTQ AASSWWIQTG GGASPSSVRE 120 RFSQALSYIR ETQSDGDVLV QLWVPVNRGD GQLVLTTSGQ PFTLDQRSDS LIRFREVSTK 180 YQFSADVKSG DSPGLPGRVF IGRLPEWSPD IRYFTSYEYP RVRDAQYLDI HGTMGLPVFE 240 KESYNCLGVI ELIMTRQKLN FTSELNTICS ALQAVNLRST EVSSVPRMQF STASYKDALP 300 EILEVLRAAC LTHKLPLAQT WVTCAQQGKR GSRHSDENYR YCISTIDEAC FVNEPKMQDF 360 HDACSEHHLL RGQGVAGKAF TTNQPCFLPD IGSSTKLEYP LSHHAKIFDL KGAVAIRLRC 420 TRTGTADFVL EFFLPTDCEA LEEQKVVLDS LSGTMRSVCQ TLRVVTDKEM EDEAIWEMNE 480 LNSFTPQGKN KVEELSFGGS SADRRGEASW TSLAETSQQE SELAAMQMHG MFSSGGQGPS 540 LSGVQATAEG SKAKRRTKAE KTVSLQVLRQ YFAGSLKDAA RSLGVCPTTL KRICRQHGIT 600 RWPSRKIKKV DHSLRKLQQI IDSVHGAETS FQLNTLYKDL TNTSISSENN LSGSNTVPPT 660 NQSNLTNFDK HRHHKSNSIV PSTSHSHSSC SHNSDSSPSC SGGATKHAPQ GIIDLMKSGN 720 PVKDSPIQTL QTENTSLYEH FSVNEAPTNL LQDVTEKANG GLHSKRSPSS PKHNAEANMR 780 VKATFGSEKV RFRLNPECNF QELKYEIAKR LSIVDTSSLI LKYLDDDSEW VLMTCDADLQ 840 ECLHVYKLAD IQTIKISVHL AVSPAARVTT GHTGLS*

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MCMEAWSFAS RSPAGEKSNP ESLTCMEGGG GDPQPSVSLQ ARTPSEGGAA VDLDLLEQLL  60
SGDNGWFEVV SRSPNSLVSP PPAAFFSADV TATAAAATTQ AASSWWIQTG GGASPSSVRE  120
RFSQALSYIR ETQSDGDVLV QLWVPVNRGD GQLVLTTSGQ PFTLDQRSDS LIRFREVSTK  180
YQFSADVKSG DSPGLPGRVF IGRLPEWSPD IRYFTSYEYP RVRDAQYLDI HGTMGLPVFE  240
KESYNCLGVI ELIMTRQKLN FTSELNTICS ALQAVNLRST EVSSVPRMQF STASYKDALP  300
EILEVLRAAC LTHKLPLAQT WVTCAQQGKR GSRHSDENYR YCISTIDEAC FVNEPKMQDF  360
HDACSEHHLL RGQGVAGKAF TTNQPCFLPD IGSSTKLEYP LSHHAKIFDL KGAVAIRLRC  420
TRTGTADFVL EFFLPTDCEA LEEQKVVLDS LSGTMRSVCQ TLRVVTDKEM EDEAIWEMNE  480
LNSFTPQGKN KVEELSFGGS SADRRGEASW TSLAETSQQE SELAAMQMHG MFSSGGQGPS  540
LSGVQATAEG SKAKRRTKAE KTVSLQVLRQ YFAGSLKDAA RSLGVCPTTL KRICRQHGIT  600
RWPSRKIKKV DHSLRKLQQI IDSVHGAETS FQLNTLYKDL TNTSISSENN LSGSNTVPPT  660
NQSNLTNFDK HRHHKSNSIV PSTSHSHSSC SHNSDSSPSC SGGATKHAPQ GIIDLMKSGN  720
PVKDSPIQTL QTENTSLYEH FSVNEAPTNL LQDVTEKANG GLHSKRSPSS PKHNAEANMR  780
VKATFGSEKV RFRLNPECNF QELKYEIAKR LSIVDTSSLI LKYLDDDSEW VLMTCDADLQ  840
ECLHVYKLAD IQTIKISVHL AVSPAARVTT GHTGLS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025800526.1	0.0	protein NLP1-like isoform X1
TrEMBL	A0A2S3H1U8	0.0	A0A2S3H1U8_9POAL; Uncharacterized protein
STRING	Pavir.Bb02544.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5554	38	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.B03741.1