PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B03592.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | DBB | ||||||||
Protein Properties | Length: 213aa MW: 22969.6 Da PI: 5.965 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.5 | 5.7e-08 | 3 | 33 | 4 | 34 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ +e ++ lfC ++ lC+ C ++ H Pahal.B03592.1 3 TICDVCEGAPAVLFCAADEAALCRACDEKVH 33 68**************************998 PP | |||||||
2 | zf-B_box | 22.8 | 1.9e-07 | 52 | 91 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + +C+ +e+ ++ ++Ce +++ lC +C ++ H g H Pahal.B03592.1 52 KLARCDICESFPAFFHCEIDGTSLCLSCDMTVHVGgkrtH 91 6789*****************************6655556 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.153 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.0E-9 | 1 | 47 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-6 | 3 | 41 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.73E-8 | 3 | 45 | No hit | No description |
SMART | SM00336 | 3.4E-7 | 51 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 8.25E-6 | 55 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0071483 | Biological Process | cellular response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MRTICDVCEG APAVLFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLANS NKLARCDICE 60 SFPAFFHCEI DGTSLCLSCD MTVHVGGKRT HGRYLLLRQS VEFPGDKLGH MDDDVAMQSK 120 DPENQIDQKK PPHAATKEQM ANHHNGSDDP ASDGNCDDQG NINSKMIDLN MRPVRTNGQG 180 SNSQTQGVAL SVNNHDSPGV VPTSNYEGDA NK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957436.1 | 1e-146 | B-box zinc finger protein 19 isoform X2 | ||||
Swissprot | C0SVM5 | 1e-65 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A2S3H1V2 | 1e-156 | A0A2S3H1V2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba01246.1.p | 1e-145 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10334 | 22 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 6e-68 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B03592.1 |