PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03572.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 868aa    MW: 91567.5 Da    PI: 6.3339
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03572.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox681.2e-21126181156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++eLe++F+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k
  Pahal.B03572.1 126 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSKRLNLESRQVKFWFQNRRTQMK 181
                     688999***********************************************999 PP
2START156.12.8e-493445814205
                     HHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   4 eeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ++a++el+k a+ +e +W   +      e +n de++  f++  +     +  ea r+ gv +  +++lv +l+d + +W+e+++    +a+t++
  Pahal.B03572.1 344 LAAMEELMKVAQMDELLWLPNPdgggglETLNFDEYRHAFARVFGpspagYVAEATREAGVAITSSVDLVDSLMDAA-RWSEMFPcivaRASTTD 437
                     789*************************************775559*******************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--................-TTSEE-EESSEEEEEEE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...............sssvvRaellpSgiliep 156
                      issg      g +qlm aelq+lsplvp R++vf+R+++q+ +g w++vdvSvd    p                  ++++ ++llp+g+++++
  Pahal.B03572.1 438 IISSGmgatrsGSIQLMHAELQVLSPLVPiREVVFLRFCKQHAEGLWAVVDVSVDAVLRPDGgnphahhhnlaqnggAAGYMGCRLLPTGCIVQD 532
                     ******************************************************97655432222222222344456789*************** PP

                     ECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 157 ksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                     + ng+skvtwv h++++++ +h+l+r+l++sg+a ga++w+a lqrqc+
  Pahal.B03572.1 533 MNNGYSKVTWVVHAEYDEAAVHQLYRPLLRSGQALGARRWLASLQRQCQ 581
                     ************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.93E-22108183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-23113183IPR009057Homeodomain-like
PROSITE profilePS5007118.301123183IPR001356Homeobox domain
SMARTSM003898.7E-20124187IPR001356Homeobox domain
PfamPF000464.1E-19126181IPR001356Homeobox domain
CDDcd000866.79E-20126183No hitNo description
PROSITE patternPS000270158181IPR017970Homeobox, conserved site
PROSITE profilePS5084839.183332585IPR002913START domain
SuperFamilySSF559611.26E-25337581No hitNo description
CDDcd088758.54E-97338581No hitNo description
SMARTSM002348.9E-35341582IPR002913START domain
PfamPF018523.9E-41344581IPR002913START domain
SuperFamilySSF559616.11E-15657857No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MSFGGMFDGA AGSGVFSYDA GGGGGGGGAG MHNHGRLIPA PPLPKPGGFG APGLSLGLQT  60
NMDGGQLGDM SRMGLMGGSG SGSAGEGDSL GRGREDENDS RSGSDNVDGA SGDELDPDNS  120
NPRKKKKRYH RHTPQQIQEL EAVFKECPHP DEKQRMELSK RLNLESRQVK FWFQNRRTQM  180
KTQIERHENA LLRQENDKLR AENMTIREAM RNPICANCGG AAVLGEVSLE EQHLRIENAR  240
LKDELDRVCA LAGKFLGRPI SSGSPMPSLP GCSGLELAVG SNGFGLGPLG ASALQPLPDL  300
MGGGLPGSVG SAAMRLPAGI GALDGAMHGA ADGVDRTVLL ELGLAAMEEL MKVAQMDELL  360
WLPNPDGGGG LETLNFDEYR HAFARVFGPS PAGYVAEATR EAGVAITSSV DLVDSLMDAA  420
RWSEMFPCIV ARASTTDIIS SGMGATRSGS IQLMHAELQV LSPLVPIREV VFLRFCKQHA  480
EGLWAVVDVS VDAVLRPDGG NPHAHHHNLA QNGGAAGYMG CRLLPTGCIV QDMNNGYSKV  540
TWVVHAEYDE AAVHQLYRPL LRSGQALGAR RWLASLQRQC QYLAILCSNS LPARDHAAIT  600
PVGRRSMLKL AQRMTDNFCA GVCASAAQKW RRLDEWRGGE GGGAAGNGGG AGEGEEKVRM  660
MARQSVGAPG EPPGVVLSAT TSVRLPATPP QRVFDYLRDE QRRGEWDILA NGEAMQEMDH  720
IAKGQHHGNA VSLLRPNATS GNQNNMLILQ ETCTDSSGSL VVYAPVDVQS MHVVMNGGDS  780
AYVSLLPSGF AILPDGHSPP SNAAQGSPSV QSASGSAGSL VTVAFQILVN NLPTAKLTVE  840
SVETVSNLLS CTIQKIKSAL QASIVTP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2509850.0AJ250985.1 Zea mays mRNA for OCL3 protein (ocl3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801167.10.0homeobox-leucine zipper protein ROC6-like
SwissprotQ7Y0V70.0ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBLA0A2S3H1H00.0A0A2S3H1H0_9POAL; Uncharacterized protein
STRINGPavir.Ba01266.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120337116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein